Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq112 134 1e-26 >seq112 Length=380982 Score = 134 bits (148), Expect = 1e-26 Identities = 206/291 (71%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||| |||||||| || ||||||| ||| |||||||||| | || || ||| Sbjct 85185 GGAAATGGACGTGGCGTACGCGTCAATTGCTTTTGTAGTGGCTCGACGTGATTTAGATAG 85244 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGT-CTAAGACCAGTAACATGAGC 20253 || || ||||| || | ||| ||||| || || ||| |||| ||||| || ||||| Sbjct 85245 ATATGCGCATCGCCAATGACGTGGATAAATTCACCAGGTTCTAAT-CCAGTCACTTGAGC 85303 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 || | | || | || | ||||||||||| ||||| || || || | |||||||| Sbjct 85304 AACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTAAATGGCACGCCAAGCCCCATGTC 85363 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | || |||| |||||| || ||||| || | |||||||||||||| || || Sbjct 85364 GGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCATTTGCTACATAAAATTGGCAAAA 85423 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC 20424 || ||| || || || | ||||| | ||| || ||||||||||| Sbjct 85424 CATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTCTGCAGGGTTCCACGC 85474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441355354740080