Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1336 91.5 3e-13 >seq1336 Length=1546205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 334187 CCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGG 334246 |||| ||| ||| ||||| || ||||||||||| || |||||||| ||||| || Sbjct 25428 CCCTCCAA-CTGGCCGTTAGAGATGGCGCGCATCAGTGTAGATTTACCACAACCGTTAGG 25370 Query 334247 CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAAT 334306 || |||||||| ||||| | |||||||| ||| | || | ||| || || ||||| Sbjct 25369 ACCGCACAGACCATAGCGATGACCACGCTTAAGACGAAGACGAGCATTATTGAGTAGAAT 25310 Query 334307 TTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 | ||||| || || || ||||| || |||| || ||||| Sbjct 25309 CATACCACCGTAAGCAAGTGAAAACTCGCAATTGCAAAGATC 25268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102835318884700