Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq653 168 8e-37 >seq653 Length=2021493 Score = 168 bits (186), Expect = 8e-37 Identities = 427/648 (66%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 114680 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCT 114739 || || || |||| |||||||| || || | || || || || |||||| | || Sbjct 712327 GCACGTCCATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATTCG 712386 Query 114740 GAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGC 114799 | || || || || | | || ||||||||| ||| | ||| | | || || ||| Sbjct 712387 TAAAGTCCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGC 712446 Query 114800 TTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCA 114859 ||||| ||||| || || ||||| || || |||| | ||| || ||| | ||| Sbjct 712447 TTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCA 712506 Query 114860 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 114919 | || ||||| ||||| |||| ||| || | | ||| || ||||||||||| | Sbjct 712507 TTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAA 712566 Query 114920 TACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCA 114976 || | || | || || || || || |||| | || | ||||| | || || || Sbjct 712567 TAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCA 712626 Query 114977 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA 115036 ||||| ||||| | |||||||||||| |||| ||| ||| || || |||||||| | Sbjct 712627 TTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAAT--GT 712684 Query 115037 GACTTATTGGCTCTGACATCATGGATGTGCATAC------CAATACCCCCTGCCCACTTT 115090 ||| ||| | | || | ||||||||| |||| || || ||||| || Sbjct 712685 AACTGTTTGTCGCACGGAT----GTTGTGCATACTAACTCCAATCCCACCAGCCCATTTC 712740 Query 115091 GAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTT 115150 || || ||| || | | || | | || || || || || || ||| ||| || Sbjct 712741 GAAATACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATT 712800 Query 115151 GCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGT 115210 || | ||| ||||| ||| | |||||| | |||||||| || |||||||| |||||| Sbjct 712801 GCCAAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGT 712860 Query 115211 GTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATG 115270 ||||||||| | || | ||| ||||| ||||| ||||| | | || |||| Sbjct 712861 GTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATG 712920 Query 115271 TCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 || | | |||||| || | || || || | | ||| | ||| ||| Sbjct 712921 TCATTCTTGTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGT 712968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597329989598960