Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq321 141 9e-29 seq252 127 2e-24 seq653 84.2 2e-11 >seq321 Length=1809241 Score = 141 bits (156), Expect = 9e-29 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| |||||| ||||| |||||||| || || || | || || | ||||| Sbjct 557146 ACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCG 557205 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| ||| |||| || ||||||||||| || ||||| ||||| || || || Sbjct 557206 AGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGA 557265 Query 64355 ATTTTTTGCTTTACAACCTCCA--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 ||||| ||||| ||| || | |||| | |||| ||||| || | || | ||||| Sbjct 557266 ATTTTCTGCTTGACATTGTCAATGCTGT-CCGACGGC-TCCACGTCCAGCGTGATGGTCT 557323 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || | || || |||||||| |||||||| Sbjct 557324 TGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 >seq252 Length=912309 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| ||||| | || || | || |||||||||||||| || |||| Sbjct 785553 TTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATC 785612 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| ||||| || || || ||||||||||| ||| || Sbjct 785613 AAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGTCA 785672 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | | ||| | ||||| || | || | |||||||||||||||||| || || ||| Sbjct 785673 ATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAA 785732 Query 64436 ATTTGCAT 64443 || ||||| Sbjct 785733 ATCTGCAT 785740 >seq653 Length=2021493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/246 (69%), Gaps = 11/246 (4%) Strand=Plus/Plus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGC-CTTTTT 154963 ||||| |||||||| | |||||| | ||| | || || ||||||||||| || | | | Sbjct 712441 ACGCGCTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGT 712500 Query 154964 GTCTTCAGCGCC---CATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCA 155020 | ||| ||| | |||||| |||| || ||| ||| | | ||||| ||||| Sbjct 712501 AGC-TCATTGCCGTGATTCTTTCGC---AAATCCAGAAATTCAAAAACATCGGCATGCCA 712556 Query 155021 CGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACG 155077 ||| |||||||| | || | || |||||||| || || ||||||||||| | || Sbjct 712557 CGGTTCTAAATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCG 712616 Query 155078 CACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC 155137 || || ||| | |||||||||| ||| | || | | | |||||||||||| Sbjct 712617 AGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCC 712676 Query 155138 ACGTAT 155143 || || Sbjct 712677 CCGAAT 712682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625051539280