Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq653 181 1e-40 >seq653 Length=2021493 Score = 181 bits (200), Expect = 1e-40 Identities = 663/1026 (65%), Gaps = 33/1026 (3%) Strand=Plus/Plus Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 |||||| |||| || || || ||||| || | ||| | || || |||| ||| || || Sbjct 711930 AATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTCGCATGTTGGA 711989 Query 116298 CTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 |||| ||| ||| ||||||||| |||| ||| || ||| | || || || | Sbjct 711990 CTTTTCAGCT-TCTATGACGGGATAATAATTGACATCAATGACCTTGTTAAGGTTGCGCG 712048 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 | || | || | || | | || | ||| |||||| || ||||| | Sbjct 712049 TCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGG------TCATTCA 712102 Query 116417 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 116476 || | ||||| | ||| | || |||| ||| || || | | |||||| | ||| | Sbjct 712103 CAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGTAT 712162 Query 116477 ACTCTATAATTTCCGTACACAAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 | || || | ||| || ||||| |||| ||| ||||| | || | || | Sbjct 712163 ATTCCATCACTTCGCAGCATAAATTGCTCGAACG---AATTGTGCCAAGATTTTGCTGGT 712219 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | |||||| || || || |||||||||||||| || || || || | || | Sbjct 712220 TCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 116594 ACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCAC-AGTGGCGTTG---GCTCGCCC 116648 | |||||||| ||||| || |||| ||| | | | || || || || Sbjct 712280 CGTCCAGAATAGCAAACCATA-----GCTGCTGAGCATTAATCGTTTTTCGAGCACGTCC 712334 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTG-AGAGCC 116707 |||| |||||||| || || | || || || || |||||| |||| | | | || | Sbjct 712335 ATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCC-CAGCATTCGTAAAGTC 712393 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 | || || | | |||||||||||| ||| | ||| | | || || |||||||| | Sbjct 712394 CAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAA 712453 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 |||| || || ||||| || || |||| | ||| || ||| | |||| || | Sbjct 712454 AGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGT 712513 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 |||| ||||| |||| ||| || | | ||| || ||||||||||| | || | | Sbjct 712514 GATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAG 712573 Query 116888 CGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | | || || ||||| || |||| | || | ||||| | || || | ||||| | Sbjct 712574 CAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAA 712633 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 |||| | |||||||||||| |||| ||| ||| || || |||||||| | ||| | Sbjct 712634 CGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAAT--GTAACTGTT 712691 Query 117005 TG--GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 || || | || | ||| || | ||||| || || ||||| || || || || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | | || | | || || || || || || ||| ||| |||| | || || Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| ||| | |||||| | |||||||| || |||||||| ||||||||||||||| | Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 || | ||| ||||| ||||| ||||| | ||| |||||| | | ||| Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 117243 AATACC 117248 ||| || Sbjct 712932 AATTCC 712937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613482951127920