Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq653 114 2e-20 >seq653 Length=2021493 Score = 114 bits (126), Expect = 2e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| ||||| || || ||||| |||| | ||| | | | || ||||||||||| Sbjct 711204 CTTATCCACAGTAAATTGAATCGCGTCAGCTTTAGGTCGTCCACGCATGTAGTACATGCC 711263 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||| | ||| | || | ||||||||| | ||||| || | | | || Sbjct 711264 CGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTAAGTTTACTAATGGTCGG 711323 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| || |||||||||||||| |||||||| ||| | | | | ||||| ||||| || | Sbjct 711324 GTCAGCAATGTGAATGTTCAGCGACTGGCTCTGG-CAAATATACGCGCCTCGATCGGCTG 711382 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 ||| | | | || |||||| ||| |||||||| |||||| || Sbjct 711383 ACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACACAGTCTTGTAC 711429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795123771490720