Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq321 125 2e-23 seq252 116 9e-21 >seq321 Length=1809241 Score = 125 bits (138), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || |||||||| || || | ||| ||||| || | ||| | ||||||||| Sbjct 557146 ACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCG 557205 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || || || |||||||||||||| || ||| ||||| |||||| Sbjct 557206 AGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGA 557265 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || ||||| || || | | |||| | | || || |||| |||||| ||||| Sbjct 557266 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTG 557325 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || || ||||| || |||||| Sbjct 557326 CCTGTAAGGGTCTTGACGAAAATCTG---CATTTT 557357 >seq252 Length=912309 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||| || | | | ||||| || |||||||| || ||||| | Sbjct 785551 CCTTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 785610 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||||||||| || ||| ||||| |||||||| |||||||| || | Sbjct 785611 TCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGT 785670 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | ||| |||||||||||||| ||||| || || | ||| ||||||| Sbjct 785671 CAATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAA 785730 Query 199620 AAATTTG 199626 |||| || Sbjct 785731 AAATCTG 785737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178873838201854