Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq321 111 2e-19 seq252 104 3e-17 >seq321 Length=1809241 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || ||||| | || ||| || || || || ||||| | ||||| || | Sbjct 557139 ACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCC 557198 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| || || |||| ||||||||||| | || | | ||||| Sbjct 557199 ATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTT 557258 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| || |||| ||||| | | | || | |||| || ||||| |||| ||||| Sbjct 557259 GTCCTGAATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGA 557317 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| ||||| || || || || || || || |||||||| Sbjct 557318 TGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 >seq252 Length=912309 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || |||||||| | || | || | || || ||||||||||| ||||| | Sbjct 785551 CCTTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 785610 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | || | | ||||| ||| || || | ||||| | | | Sbjct 785611 TCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGA-CATTG 785669 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| | ||||||||||| ||||||||| ||||| |||| || || ||| Sbjct 785670 TCAATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACA 785729 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 785730 AAAATCTGCAT 785740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565216058952240