Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3042 181 1e-40 >seq3042 Length=3267112 Score = 181 bits (200), Expect = 1e-40 Identities = 408/605 (67%), Gaps = 20/605 (3%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | |||||||||||| |||| || || |||| |||||| || || ||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATT--TGA 2154057 Query 132947 AAGTC-AAG-CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 || | ||| || ||||| || || || || || |||||||| || | | ||| ||| Sbjct 2154056 AAAGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCC 2153997 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGA-ACGTGGCTT 133063 || || || | ||||| || || || ||||| | ||| | ||| | || | | | | Sbjct 2153996 TGAGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTC-CGGATATGAAGATA 2153938 Query 133064 CTTTGCTGG--CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 || ||| || ||| |||||||| | || |||| | ||||||| || || || Sbjct 2153937 CTCG--TGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGT 2153880 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAG 133181 ||| || || ||| | | || ||||| || | | || || ||||| || Sbjct 2153879 TTCAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGATAAG 2153820 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 |||||||| |||||||| | ||||| || ||||||||||||||||| || || || Sbjct 2153819 AAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCG 2153760 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 ||||| |||||||||||| | |||| | |||||||||| ||||| || || Sbjct 2153759 AGCCTCTGGCACCTGCACTTCATTGCTGAAATTCATAGCCAGATTTTCATTGACAATTCC 2153700 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 || || || |||||||| || ||||| ||||| || |||| ||||||||||| | | Sbjct 2153699 ATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAG 2153640 Query 133362 GCGCTCCCAGTC-----GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 || ||||||| | ||||| || || || | ||||| | ||||| ||| Sbjct 2153639 GCTTGCCCAGTCCTTAAGGTCGTGTACT-----AGATCGAGTTCCTCAGCTGTCCAGAAC 2153585 Query 133417 GACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACA 133476 || || || || || |||||||| ||||| || | || |||||||| | ||| Sbjct 2153584 GAGGCTTCCGCCTTCTTGTACATCTGCCACACATCGTGTTCCTGAATGGGAAAGAGCACG 2153525 Query 133477 AACCG 133481 || || Sbjct 2153524 AAGCG 2153520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153030670080