Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq428 280 6e-70 seq1204 141 4e-28 seq3101 134 5e-26 seq2577 125 3e-23 seq252 113 2e-19 seq41 109 2e-18 >seq428 Length=1405462 Score = 280 bits (310), Expect = 6e-70 Identities = 852/1291 (66%), Gaps = 39/1291 (3%) Strand=Plus/Minus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| ||| | ||||||||| ||||| || |||||||| ||||| || | ||| ||| Sbjct 1101677 AAAGGCGAATCAAAAACTTTTCAGCCTGAGGAGATTTCATCGATGGTGCTCATTAAGATG 1101618 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 || | || ||| || ||| ||| | ||| | ||||||| | || ||||| Sbjct 1101617 CGTGAGATTGCCGAAGCATTTATCGGTAAACAAGTGAGAAATGCAGTTGTGACGGTTCCA 1101558 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || ||||| |||||| | ||||| || ||||| |||||||| || ||||||||||| Sbjct 1101557 GCATATTTTAATGATTCGCAACGTCAGGCAACCAAAGATGCGGGTGCAATTGCTGGTTTG 1101498 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| ||||||||||| |||||||| || || || || | || |||||||| ||| Sbjct 1101497 AATGTGCTTCGAATTATCAATGAACCAACTGCTGCGGCAATCGCGTATGGACT-GGA--- 1101442 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 ||| | || || || | || | || | |||||| | || || ||||| ||| Sbjct 1101441 -CAAGA-AAGGAGGCGAGCACCATGTGTTGATTTTTGATCTCGGAGGTGGAACGTTTGAC 1101384 Query 451520 ACTTCTGTACTTT---CAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| ||||| | |||||||| || | |||||||| | |||||| ||||| Sbjct 1101383 GTTTC---ACTTTTGACTATTGAAGAAGGTATCTTTGAAGTCATGGCAACTGCCGGTGAC 1101327 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAAAACTGATGTT 451636 || || ||||||| |||||| |||| ||| | | || || | || | || || Sbjct 1101326 ACCCACTTAGGAGGAGAAGATTTTGACAATCGATTAGTTGAGTATTTTGTTGCGGAATTT 1101267 Query 451637 CAACGAAAAC--TAAAAGTAGATATTTCTACTAACCAAAAAGC---ACTTAGACGTCTTA 451691 | || |||| |||| ||| | || || ||| || || | | | || || Sbjct 1101266 AAGCGCAAACATCGAAAG--GATTTGTCGGTCAATCAACGTGCTTTACGTCGTCTTCGTA 1101209 Query 451692 AAACAT--CAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAAC-TACTAGTATAA 451748 ||| ||| ||||| | || || | ||| | || | ||| | Sbjct 1101208 CGGCATGCGAGCGCGCAAAGCGGACGTT-GTCT-ACGTCAGCCCAGGCGTAC----CTCG 1101155 Query 451749 ACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAAATTTG 451808 | |||||| ||| |||| || || |||| | | || |||| || || |||| Sbjct 1101154 AAATTGATTCGTTATTTGACGGCATCGATTTTAACTCGACCATTACACGAGCGCGTTTTG 1101095 Query 451809 AATCAATTTGTTC-CAGTATTTTTGCACGGGTAATGAAACCTGTTGATCAAGTATTACAT 451867 || ||||| | |||| ||| | | | ||| | || || | ||||||| ||| Sbjct 1101094 AAGATCTTTGTGCTGAGTACTTTCGGA-AGACCATGGATCCCGTGGCTCAAGTACTACGA 1101036 Query 451868 GATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGA 451927 ||||| || | ||| | | | |||||||||| |||||||||||||| || ||| Sbjct 1101035 GATTCCAAGCTGTCCAAAAGTCAGGTGAATGAAATTGTTCTTGTAGGAGGTTCAACGCGA 1100976 Query 451928 ATTCCTAAAATTCAAGATATGTTG-TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAG 451986 ||||| || | || | ||| || | ||| |||| || || | || | ||| | Sbjct 1100975 ATTCCAAAGGTGCAGCAAATGCTGATGGACTT-TTTTAACGGCAAGGATCTGTTTAA-AT 1100918 Query 451987 CG-TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAG 452045 || | || || ||||| ||||| || ||||||||| |||| || || || ||| ||| | Sbjct 1100917 CGATCAACCCAGATGAGGCTGTAGCGTATGGTGCTACAGTGCAGGCGGCAATTTTAAGTG 1100858 Query 452046 G--TTCAG-ATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTC 452102 | | || | || ||||| ||| || || || |||| || | ||| | |||| Sbjct 1100857 GAAGTGAGTCTTCTGCGAAATTGCAAGACCTTTTGCTATTAGACGTGGCGCCTTTGTCTC 1100798 Query 452103 TTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTC 452162 ||||| | ||||| ||||||||| | ||||| || | ||| || || | | || Sbjct 1100797 TTGGACTAGAAACTGCTGGTGGAGTTATGACCAAGCTCATTCCTCGCAACACGAC-AGTC 1100739 Query 452163 CTTGTAAA-AAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATT 452221 | | ||| |||| ||| | || ||| | ||||||||| | || || ||| Sbjct 1100738 CCGGCAAAGAAGATGCAATCGTTCTCAACATATACTGATAACCAGTCTGGCGTGTTGATT 1100679 Query 452222 CAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACT 452281 |||||||||||||| ||||| | |||||||| || ||| || ||| || |||| | | Sbjct 1100678 CAAGTGTTTGAAGGCGAACGGACTATGACACGTGACAATCATTTACTGGGCAAATTCAGT 1100619 Query 452282 CTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTT 452341 || ||||| |||||||| | || ||||||||||| | || | ||| ||| Sbjct 1100618 CTGGATGGTATTCCGCCTATGCCGCGCGGTGTGCCTCAAATTGACGTCACATTTGACGTT 1100559 Query 452342 GATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAA 452401 |||| ||||| ||| | |||||| || || ||||| ||| | |||||| | | || Sbjct 1100558 GATGTGAATGGAATTTTAAATGTGTCGGCCGTGGAAAAGTCAACAGGAAAAGAAAATAAG 1100499 Query 452402 ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGAT 452461 ||||| || || ||||| || || |||||| | ||| || || |||||| | | Sbjct 1100498 ATTACGATAACGAATGACAAGGGACGATTATCTCAGTCAGAAATCGACCGAATGGTTGCT 1100439 Query 452462 GAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 || || || |||| || ||| | ||||||| Sbjct 1100438 GATGCCGATAAATATAAAGATCAAGATGAAC 1100408 >seq1204 Length=1808626 Score = 141 bits (156), Expect = 4e-28 Identities = 328/489 (67%), Gaps = 9/489 (2%) Strand=Plus/Plus Query 451118 ATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGAT 451177 ||||| |||| ||| ||||| | | || ||| || || || |||| ||||||| Sbjct 793332 ATTGGTCGTAAGTACAATGATAAGTCCGTGCAAGCTGACAAGAAGCTCTTGCCTTATGAG 793391 Query 451178 GTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGG-TGAAA--CTAAA 451234 | || || | | || ||||| | ||| || || | || |||| ||||| | | Sbjct 793392 CTTGTTAACAAGGATGGGAAGCCTTTTATCCAGGTGG-TGATCAAGGGTGAAAAGCGTCA 793450 Query 451235 ACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAA 451294 | ||||| ||||| ||| |||| ||||||||||| | || |||||| | | | ||| Sbjct 793451 A--TTTGCACCTGAGGAAGTTTCGGCTATGGTTCTTTCAAAGATGAAACAGATTTCCGAA 793508 Query 451295 CAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGAT 451354 || || || | ||| ||| || || | || || || || || || |||||| Sbjct 793509 GGCTACATCGGCCGTGAAGTGTTTGACGCTGTGGTGACAGTGCCTGCCTACTTTAATGAT 793568 Query 451355 GCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATT 451414 || ||||| || || |||||||| || || || |||||| | | |||| || ||| Sbjct 793569 GCCCAACGCCAGGCCACTAAAGACGCTGGTACGATCGCTGGTCTCACGGTTCAGCGTATT 793628 Query 451415 ATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA 451474 ||||| || |||||||| ||||| | || || || | | || || | || Sbjct 793629 ATTAACGAGCCTACAGCTGCTGCCATTGCTTACGGTATTGACAAG---AAGGCGCAAGGC 793685 Query 451475 GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA 451534 || ||||| ||||||| |||||||| ||||| || ||| |||| | || | || || Sbjct 793686 GAGAAAAACGTTTTAGTGTTTGATTTGGGTGGTGGTACTTTTGATGTTACTCTTCTGGCA 793745 Query 451535 ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 || || | || || ||||| || || || || ||||||||||| | || |||||| Sbjct 793746 ATCGATGGCGGTGTGTTTGAGGTGCTTGCCACTAACGGTGATACTCACTTGGGCGGTGAA 793805 Query 451595 GATATTGAT 451603 || ||||| Sbjct 793806 GACTTTGAT 793814 >seq3101 Length=2481951 Score = 134 bits (148), Expect = 5e-26 Identities = 249/364 (68%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 ||||| ||| |||||||| ||||| ||||| || || ||||| || | | ||| | Sbjct 295543 AAATTGGATCCATGGTTCTCACTAAGATGAAGGAGACTGCAGATGGATTTCTGGGTAAGC 295484 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 | |||| | || || || || ||||| || || || || || |||| || ||||| | Sbjct 295483 CTATTACCCAGGCCGTTATCACGGTTCCTGCGTACTTTAACGACTCACAGCGTCAAGCTA 295424 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||| ||||| || | ||||||||||| |||| ||||| || ||||| ||||| |||| Sbjct 295423 CTAAGGATGCCGGCAAAATTGCTGGTTTGGATGTGCTTCGTATAATTAACGAACCCACAG 295364 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | |||||||| || || || | ||| | | | || | || ||| | Sbjct 295363 CCGCTGCTCTGGCTTACGGTAT-GGACA--------AGGCTGACGGCAAGGTCATTGCTG 295313 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTAT 451550 | |||||| |||| || || || ||| ||| | || ||| || ||| |||| Sbjct 295312 TCTTTGATCTTGGAGGTGGTACCTTCGATGTTTCAATTCTGGAGATTTCAGGTGGTGTAT 295253 Query 451551 TTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAA 451610 ||||||| ||| | ||||| ||||| || | || || || ||||| ||||| | | || Sbjct 295252 TTGAAGTCAAGTCTACCAACGGTGACACACTACTTGGTGGGGAAGACTTTGATGA-GGAA 295194 Query 451611 TTGT 451614 |||| Sbjct 295193 TTGT 295190 >seq2577 Length=255817 Score = 125 bits (138), Expect = 3e-23 Identities = 267/396 (67%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 ||| | | ||| || ||| | ||||| || |||||||||||||| || ||||| | Sbjct 216599 GTACAGTTTAAGGGCGAATCGAAAACCTTCCAGCCTGAAGAAATTTCGTCCATGGTGTTG 216658 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 | |||||| || ||| ||| || |||||| ||| | |||| || || Sbjct 216659 ATCAAAATGCGTGAGGTAGCTGAAGCATTTATTGGCAAGGAAGTAAAAAATGCTGTTATC 216718 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| || || ||||| || | || || ||||||||||| || || || ||| Sbjct 216719 ACGGTTCCTGCCTACTTCAACGACTCGCAGCGTCAAGCAACTAAGGACGCTGGTGCAATT 216778 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||| | || || ||||| ||||| || || ||||| || |||||| | ||||| || Sbjct 216779 GCTGGTCTTAACGTACTTCGTATTATCAACGAGCCTACGGCTGCTGCTATTGCATACGG- 216837 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 || ||| ||| | | | ||| ||| | || | |||||| |||||||||| Sbjct 216838 CTTGGA----CAAGA-AGGGCGGTGAACGCAATGTGTTGATCTTTGATCTTGGTGGAGGT 216892 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 || ||| ||| | | ||||| || || | |||||||| ||||| || | Sbjct 216893 ACCTTCGATGTTTCGCTGTTGAGCATTGAGGAAGGTATCTTTGAAGTGAAGGCTACTGCT 216952 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| || || || || ||||| || |||| ||| Sbjct 216953 GGTGACACCCACCTTGGTGGTGAGGACTTTGACAAT 216988 >seq252 Length=912309 Score = 113 bits (124), Expect = 2e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || || || |||| || || || || || | ||||| ||| | Sbjct 785743 ATCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATCACGTTGGATGTGGAACCT 785684 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | |||||| | | || ||||||||||| ||||||||||| ||||| ||||| Sbjct 785683 TCTGACAGCATTGACAATGTCAAGCAAAAAATTCAGGATAAGGAAGGTATTCCACCTGAC 785624 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || || || |||||| | || || || ||||| ||||| || | | || || || Sbjct 785623 CAGCAGCGCTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGATCCCTTGCAGACTAC 785564 Query 391227 AATATTGATAAGGATGC 391243 || ||| | |||| ||| Sbjct 785563 AACATTCAGAAGGGTGC 785547 >seq41 Length=984709 Score = 109 bits (120), Expect = 2e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 63852 ATCACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAA 63911 || ||||||||||| || | ||| ||||| ||||||| | |||||| ||||||| Sbjct 500349 ATTACTCCACCAATCATAAAGATTTCCATCACCATCAAAATATCGTCCTTGTGCATCAAA 500290 Query 63912 CCCATGAGTGATTTCATGAGCTATAACTACT-CCAATTCCTCCATAATTTTGTGCAATCG 63970 ||||| || | |||||| | || | |||| ||||| ||||||||||| |||| | Sbjct 500289 TCCATGTGTTAATTCATGTCCAATGA-TACTTCCAATAGCTCCATAATTTCGTGCCAAAT 500231 Query 63971 TATAATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATTTA 64030 ||||| | ||| || || |||||| ||| |||||||||| ||||||| |||| Sbjct 500230 GATAATGTTGCGAAAAGAATGGAATTTGTAAGATACCAGCTGGAAAAACAATTTGATTTG 500171 Query 64031 ATAAAGGATGATAATAAGCATT 64052 || || |||||| | ||||| Sbjct 500170 ATGTTGGTTGATAAAATGCATT 500149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975638357473496