Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq653 163 4e-35 seq322 89.7 6e-13 >seq653 Length=2021493 Score = 163 bits (180), Expect = 4e-35 Identities = 379/566 (67%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 111675 GAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAAC 111734 ||||||||||| ||||| | | || | |||||| |||||||| |||||||| Sbjct 712904 GAGACATACGAGTTCATGTCACAAAAGTTTTTTACCCACGCGACACCAACACTCTTCAAT 712845 Query 111735 GCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCA 111794 || |||||||| | || ||| | || || || ||| | |||| |||| |||||| Sbjct 712844 GCAGGTACACCGCGTCCACAATTATCGTCATGCTTTCTTTTGGCAATGCAGGATGATTCA 712785 Query 111795 ATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGT 111854 || | || || || | || || | ||||||| || || || ||||||||||| Sbjct 712784 ATAGAAGGTATATATGATACACTTAAACAATGTGCGTGTATTTCGAAATGGGCTGGTGGG 712725 Query 111855 ATCGGGATGCACATCCATGATGTCAGAGC--CAACAAGTCTCGTATTAGAGGTACAAATG 111912 || || | || || | || | || ||| ||| | ||| | || || || | Sbjct 712724 ATTGGAGTTAGTATGCACAACATCCGTGCGACAAACAGTTAC--ATTCGGGGCACCAACG 712667 Query 111913 GTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAA 111972 | ||| |||| || ||||||||| | ||||| ||||| | || || || ||||| Sbjct 712666 GCTCATCGAATGGAATCATTCCAATGTTGCGCGTTTTTAATGATACTGCTCGATATGTGG 712607 Query 111973 ACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGG 112029 | |||| ||| || ||||| ||||| | || ||||| | || || ||||| || | Sbjct 712606 ATCAAGGTGGTGGTAAGCGCAAAGGATCGTTTGCTATCTATTTAGAACCGTGGCATGCCG 712547 Query 112030 ATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCG 112089 || | | || || || || ||||| || || || ||||| || ||| | Sbjct 712546 ATGTTTTTGAATTTCTGGATTTGCGAAAGAATCACGGCAATGAGCTACATCGTGCCCGTG 712487 Query 112090 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 112149 || | |||| || || ||||| || |||||||| |||||| | || || | || ||||| Sbjct 712486 ATTTGTTCTATGCACTATGGATACCGGATCTCTTTATGAAGCGCGTCGAAGCGAATGGCA 712427 Query 112150 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG-ATGCCGTGGGTGAGGAG 112208 | ||| |||||| ||||| || | || || || || | || |||| | |||||| || Sbjct 712426 AGTGGAGTCTCTTCTGTCCGAACGAAGCGCCTGGACTTTACGAATGCTG-GGGTGATGAA 712368 Query 112209 TTTGAAGCCCTCTACACAAAGTACGA 112234 || || || | || || |||||||| Sbjct 712367 TTCGATGCATTATATACTAAGTACGA 712342 >seq322 Length=2746546 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/404 (66%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || || ||||||||||||||||| | ||||||| ||||| || ||||||||||| | Sbjct 2695556 TCGAACCCATCCATCTCTGTCAACAATTGGTTAAGCGTTTGCTCTCGTTCATCATTTGAA 2695615 Query 16032 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 || |||||| ||| | || | | ||||||||||| || ||||| | ||| Sbjct 2695616 TTAATCCCACCA----CGCGCT--TTAGCTAGCGCATCAATCTCGTCGATGAAAATGATA 2695669 Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 ||| | ||| | ||| | | ||| ||||||||||| || || || ||| Sbjct 2695670 CATTGCGGATACTGTGAAGCTTGCGTGAAA-AGATCCCGTACTCGAGCTGCACCTCTACC 2695728 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||| |||||| ||||||| | || ||||| || || | || | ||| Sbjct 2695729 AACAAGCATCTCGACAAAGTCAGAAGCTGAACAAAAGAGAAACGCAACTCCTGCTTCTGA 2695788 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||| | |||| || || || ||||| || || |||| || || || |||| Sbjct 2695789 CGCGACTGCTCTAGCAAGTAGCGTCTTGCCAGTTCCTGAAGGTCCACAAAGTAGTACACC 2695848 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTG-CTTAAGAAAATCCACAA 16329 | ||||| ||||| ||| || | ||| | | || || | |||| || ||||| | Sbjct 2695849 TTTTGGAACTTTGGCACCAATTGCTTGGTACTTGGCTGGATGTCGTAAG-AATTCCACGA 2695907 Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 16373 ||| ||||| || | | | ||| | ||||| || | |||||| Sbjct 2695908 CCTCCTCCAACTCTTTTCTTGCGCCATCAATGCCTGCCACATCG 2695951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620717865156640