Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq653 174 2e-38 seq553 95.1 1e-14 >seq653 Length=2021493 Score = 174 bits (192), Expect = 2e-38 Identities = 560/860 (65%), Gaps = 22/860 (3%) Strand=Plus/Plus Query 110375 CCAAGTTCTT-CTGATTCGA-TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGT 110432 ||||| | || ||| ||||| ||| || | ||| || || || |||||||| || || Sbjct 712204 CCAAGATTTTGCTGGTTCGACTTTCGATTCGCA-GCGTCTTTGTAGAGCATATAAGGAAC 712262 Query 110433 ACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG- 110491 ||||||||| |||| | | ||||| || ||||| || || | | || | Sbjct 712263 ACCAGTTTCAATCTGAGCGTCCAGAATAGCAAACCATA-----GCTGCTGAG-CATTAAT 712316 Query 110492 CGTT-----AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCC 110546 |||| ||| | || |||| |||||||| || || || | || ||||| | || Sbjct 712317 CGTTTTTCGAGCACGTCCATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACC 712376 Query 110547 GTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTC 110606 | || |||| || ||| | || ||||||||||| ||| || ||| | | Sbjct 712377 CCAGCATTCGTAAAGTCCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGC 712436 Query 110607 CTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACG 110666 || || | |||||| || || || || ||||| | || |||| | |||||| ||| Sbjct 712437 TTCGACGCGCTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACG 712496 Query 110667 AGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 | |||| || || || || | |||| ||| || | | ||| | ||||| Sbjct 712497 ATGTAGCTCATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCA 712556 Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCG 110783 ||||| | ||||| ||| | ||||| || || || ||| | || | ||||| || Sbjct 712557 CGGTTCTAAATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCG 712616 Query 110784 TGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC 110843 || || |||| || || | | ||| ||||| ||||||| ||| || || || || Sbjct 712617 AGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCC 712676 Query 110844 CCTAATTCTGGACTTATTG--GCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || ||| ||| ||| ||||| |||| ||| ||| | ||||| ||||| ||| Sbjct 712677 CCGAATGTA--ACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCC 712734 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 || || ||| ||||| | | | |||||| |||| ||||| || || ||||| || Sbjct 712735 CATTTCGAAATACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCC 712794 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 | | || | |||||||| || || | || ||||| || || || |||||||||||| Sbjct 712795 TGCATTGCCAAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGT 712854 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081 || |||||||| || | || | ||| ||||| | |||||| |||||||| | Sbjct 712855 GTTGGTGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCT 712914 Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCG 111141 | || || |||||| || | || || || | || ||| | |||||| ||| Sbjct 712915 TTAATGTCATTCTTGTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCG 712974 Query 111142 ATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 | | ||||||| ||||| || || | ||| || ||||| | ||||| || Sbjct 712975 ACAACTTTTCCATTTACACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAG 713034 Query 111202 CCAAAATCGAAATCACGATC 111221 || | || || ||||| || Sbjct 713035 TCATACTCAAAGTCACGGTC 713054 >seq553 Length=2240492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 || ||||| | |||||| || ||||||| |||| || ||||| | ||||||| | ||| Sbjct 1512441 TTTCCACGTAATGGAAAGACTCCATAATAGTCTCGTCCAACGACAGCGAGACCACCCACA 1512500 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 || | ||||| || ||||| || ||||| | ||| || || || | || ||| | | Sbjct 1512501 GCCACTGTTTTAGCCGAATCTCCTTCTGTAATGATCAGCGTGCAAT--CCTTACTTTTTG 1512558 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 |||||||||| | || ||||| || || || || || ||||||| Sbjct 1512559 CCGTACCAGCGTGATTGGCATCATCTAACTTAGGAATGCCAGTGA 1512603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588952720723600