Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq653 159 4e-34 >seq653 Length=2021493 Score = 159 bits (176), Expect = 4e-34 Identities = 681/1062 (64%), Gaps = 43/1062 (4%) Strand=Plus/Plus Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 |||||| |||| || || || || || || | || | |||| ||||||||| || || Sbjct 711930 AATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTCGCATGTTGGA 711989 Query 106330 CTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 106388 |||| || ||| ||||||||| |||| |||||||| ||| || || | Sbjct 711990 CTTTTCAGCT-TCTATGACGGGATAATAATTGACATCAATGACCTTGTTAAGGTTGCGCG 712048 Query 106389 TAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGA 106448 | || || || | || | | ||| | || |||||| || ||||| | Sbjct 712049 TCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGG------TCATTCA 712102 Query 106449 CATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGT 106508 || | || || | ||| | ||||||||||||||||| || |||||| | || | Sbjct 712103 CAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGTAT 712162 Query 106509 ACTCTAAAATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 | || | | ||| || || ||| |||| ||| || || | ||| | |||| Sbjct 712163 ATTCCATCACTTCGCAGCATAAATTGCTCGAACG---AATTGTGCCAAGATTTTGCTGGT 712219 Query 106566 TACTCTTTTTGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 | |||| || ||| || || ||||||||||| || || || || || |||| Sbjct 712220 TCGACTTTCGATTCGCA-GCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGA 712278 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCGGCTG-GTAC-AATGGCGTTG---GCCCGTC 106679 | | ||||| || ||| | || |||| | | ||| | || || |||| Sbjct 712279 GCGTCCAGAATAGCAAACCATA-----GCTGCTGAGCATTAATCGTTTTTCGAGCACGTC 712333 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT-CGGAGAGA 106738 | ||| |||||||| || || | || || || || |||||| | || | || | || Sbjct 712334 CATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCC-CAGCATTCGTAAAGT 712392 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || || | || |||||||| ||| ||| | ||| | | || || |||||||| Sbjct 712393 CCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATA 712452 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || || || ||||| || | | || | ||| | ||| || | || Sbjct 712453 AAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCCG 712512 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 || || ||| || || || || || | | ||| || ||||| || || | ||||| Sbjct 712513 TGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATA 712572 Query 106919 GCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 106975 || | ||||| || || || ||| |||||| ||||| || || || | ||||| Sbjct 712573 GCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAA 712632 Query 106976 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA 107035 ||||| | ||||||||| || |||| ||| || || || |||||||| | | | Sbjct 712633 ACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAAT--GTAACTGT 712690 Query 107036 TTGGCTCTCACATCATGGATGTGCATCC------CAATACCCCCAGCCCACTTTGAGATT 107089 ||| | | | || | ||||||| | |||| || |||||||| || || || Sbjct 712691 TTGTCGCACGGAT----GTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATA 712746 Query 107090 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 107149 |||||| | |||| || |||| ||||| | ||||| || |||| | || | | Sbjct 712747 CACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAA 712806 Query 107150 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 107209 || ||||| || | || || | |||||||| ||||||||||| |||||||| ||| Sbjct 712807 AGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCG 712866 Query 107210 TGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 107269 || | || | ||| ||||| ||||||||||| | ||| | |||||| | | Sbjct 712867 TGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTC 712926 Query 107270 CCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||| || || | |||||||| | | ||| | ||| ||| Sbjct 712927 TTGTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGT 712968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589957481008880