Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq322 109 6e-19 >seq322 Length=2746546 Score = 109 bits (120), Expect = 6e-19 Identities = 269/405 (66%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 154711 GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGG 154770 |||| || || | || || | ||||||||| || || ||||| || ||||||||||||| Sbjct 304756 GAAACGTGTGCCTCATCCCCGTGTCAGCACACGGTACGAATCCAGCCAGTGCTGTCATGG 304697 Query 154771 CAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATC 154830 |||| ||||| || || | |||| | ||||| |||| || | || |||||| Sbjct 304696 CAGGAATGAAGGTAGTCGTCATCAAATCGGATGAGAATGGCCACGTGGATCGTGAAGATC 304637 Query 154831 TAGAGAAGAAAGCAATCATGAATAC------ATTTGAACTGTCATGTATTATGATTACAT 154884 | | |||||| |||| || | || || | ||||||||| || | Sbjct 304636 TTGCTGCCAAAGCAGC--TGAACACTCCGCCAATTTAAGCGC----TATTATGATCACGT 304583 Query 154885 ACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGA--TCGTTCA 154942 ||||||| ||| ||||||||| || || |||| |||||| ||| || | || Sbjct 304582 ACCCATCGACATTTGGTGTATTCGAGCCTGGTATTAAG--GATATGCTAGACCTCATCCA 304525 Query 154943 TGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGC 155002 | || | ||| || ||| | ||||| ||||| | ||||| || || | || Sbjct 304524 CTCGCACGGAGCTCAAGTGTATATGGATGGCGCAAACATGAATGCGCAAGTGGCCCTGTG 304465 Query 155003 AAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTAT 155062 || ||| | |||||| ||||| || || ||||| | || ||||| |||||||| Sbjct 304464 CAATCCAGCAGGCATTGGTGCTGATGTTTGCCACTTAAACCTGCACAAAACCTTCTGTAT 304405 Query 155063 TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGC 155107 ||| || || || || || || || || ||| |||| || || || Sbjct 304404 TCCTCACGGTGGCGGTGGCCCCGGTGTTGGTTCTATCGGCGTCGC 304360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579189906614080