Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq321 172 1e-37 seq252 136 9e-27 >seq321 Length=1809241 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| ||||| || |||||||| ||||| || || || |||||||| | ||||| Sbjct 557142 CAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATC 557201 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || || || || || || || ||||| || ||||| ||||| ||||| Sbjct 557202 TTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTC 557261 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| |||||||| || |||||| ||||||| ||||| || || || | || Sbjct 557262 CTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGT 557321 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| ||||| | || || ||||| | ||||||| Sbjct 557322 CTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTT 557356 >seq252 Length=912309 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| ||||| || ||||| | || ||||| || |||||||| || ||||| || Sbjct 785553 TTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATC 785612 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || ||||| ||||| || || ||||||||||||||||| || ||| Sbjct 785613 AAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGTCA 785672 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| ||| |||||| || | || | ||||| || |||||||| || || || Sbjct 785673 ATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAA 785732 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 785733 ATCTGCAT 785740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109436651433254