Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq321 105 4e-18 >seq321 Length=1809241 Score = 105 bits (116), Expect = 4e-18 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||||| ||| | ||| |||| || ||||| || || ||||| Sbjct 557164 TCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAA 557223 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||| ||||| ||||| || Sbjct 557224 ATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTCTGCTTGAC--AT 557281 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | ||| || || | || ||||| || || || || ||||| Sbjct 557282 --TGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTT 557339 Query 34967 CACAAAGATCTGCATATTC 34985 || || |||||||| ||| Sbjct 557340 GACGAAAATCTGCATTTTC 557358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621089635536