Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3042 154 2e-32 seq653 140 4e-28 >seq3042 Length=3267112 Score = 154 bits (170), Expect = 2e-32 Identities = 378/562 (67%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 || || || | ||| || | ||||| ||||| | | |||||||||||| || | || Sbjct 2154085 CCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTTC 2154026 Query 19042 tttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAA 19100 || | ||| || || || ||| ||||| || || || || ||||| |||||||| ||||| Sbjct 2154025 TTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 19101 AGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC----CATTTCAGTGCCC 19156 ||| | || || || ||| || || | || ||| || || || |||| Sbjct 2153966 AGCTAACAGCCTCTCCGGATATGAAG----ATACTCGTGGATCGCACCACTTAAGCGCCC 2153911 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCT 19216 ||| ||| || ||| | || || || || || || || | | ||||||| || Sbjct 2153910 AATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCT 2153851 Query 19217 CATCTGTATCTTTAACATATGCATCTATCAATAAACTG-TACATTTCTGAATGAATATTT 19275 || | || || | ||| | ||| || || || | |||| || || |||||||| Sbjct 2153850 CAATCGCGTCCTTGATATACGTATCGAT-AAGAAGCGAATACACCTCCGAGTGAATATTC 2153792 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA- 19334 || ||||| || ||||| ||||| ||||| | || |||| | ||| |||||| | | Sbjct 2153791 TCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGCTG 2153732 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 |||| | | ||| ||||||||| || ||||||||||||||||| ||||| || | || Sbjct 2153731 AAATTCATAG-CCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGCAC 2153673 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAG 19453 ||| |||||||||| || | || ||| | | ||| || |||| || | Sbjct 2153672 ATGCTTAATAAAATAGCGCTCGT-TGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGTGTA 2153614 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 || ||| | ||| ||| ||||||| || || || || || || || ||||| | ||| | Sbjct 2153613 CTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCCACA 2153554 Query 19514 TATCACGATATTGTATAGGAAA 19535 ||| | | || || ||||| Sbjct 2153553 CATCGTGTTCCTGAATGGGAAA 2153532 >seq653 Length=2021493 Score = 140 bits (154), Expect = 4e-28 Identities = 614/958 (64%), Gaps = 14/958 (1%) Strand=Plus/Plus Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA-C 47943 |||||| | ||| || || || || |||| ||| |||||||| || | ||| ||| | Sbjct 712122 AGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGTATATTCCATCACTTC-GCAGC 712180 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 ||| ||| | | || || || | |||||| || || | | | | || || Sbjct 712181 ATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGTTCGACTTTCGAT-TCGCA-GC 712238 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 ||| ||||| |||||| |||| |||||||| ||||||| || | |||| ||| Sbjct 712239 GTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAGCGTCCAGAATAGCAAACCA 712298 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 | | ||| || || || ||| ||| |||||||| ||||||||||| Sbjct 712299 TAGCTGCTGAGCATTAATCGTTTTTCGAGCACGTCCATCCTGTTCGTACTTAGTATATAA 712358 Query 48122 CTTCTCAAATTCATCCCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCA 48180 || |||||||| || | |||| || ||||| ||| || ||||| | | Sbjct 712359 TGCATCGAATTCATCACCCCAG-CATTCGTAAAGTCCAGGCGCTTCGTTCGGACAGAAGA 712417 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 ||| | ||| || || | ||||||| | ||| |||||||| || || | Sbjct 712418 GACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGAGATCCGGTATCCATAGTGC-A 712476 Query 48241 TA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 || || ||||| | | | || |||||||| |||| || | || ||||| Sbjct 712477 TAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTGATTCTTTCGCAAATCCAGAAAT 712536 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | | ||| |||||||| ||||||||||| || || | ||| || ||| | Sbjct 712537 TCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCAAACGATCCTTTGCGCTTACCA 712596 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||||| ||||||| ||| |||| | |||||||| | || ||| Sbjct 712597 CCACCTTGATCCACATATCGAGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCA 712656 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| || ||||| ||| ||| ||||| | || | || || || | Sbjct 712657 TTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTTTGTCGCACGGATGTTGTGCATACTA 712716 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || ||||| ||| ||| || || ||||| ||||||| |||||||| || Sbjct 712717 ACTCCAATCCCACCAGCCCATTTCGAAATACACGCACATTGTTTAAGTGTATCATATATA 712776 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 |||||||| |||||| ||| || ||||| || || | ||| ||| | Sbjct 712777 CCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGCATGACGATAATTGTGGACGCGGT 712836 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || |||| ||| || | |||||| | || || |||| | || | ||| | || | Sbjct 712837 GTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCG 712896 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATTA 48717 ||||| || | ||| | || || |||| ||| || |||| | ||||| | | Sbjct 712897 TATGTCTCGAGTGCAG-CTTTA-ATGTCATTCTTGTGAATTCCTAACGCCACACGAAGGA 712954 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | |||||||| || |||| ||| ||||| || ||||| | || | Sbjct 712955 TCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTACACGAAAGAGATACCCTCGCTCGA 713014 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||| ||||| |||||||||| || |||||| || | ||||||| |||||| Sbjct 713015 GTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACGGTCGTAGATAATTGCTGAATT 713072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086582649680