Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3042 141 1e-28 >seq3042 Length=3267112 Score = 141 bits (156), Expect = 1e-28 Identities = 341/507 (67%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 37196 ACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttt 37255 ||||||||| | ||| || | ||||| |||||| | | || ||||| | ||| | || Sbjct 2154086 ACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTT 2154027 Query 37256 tttAATCCAAAATATTGCTGCAAAA-GATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||| |||||| |||| ||| || || || || || |||||||| || ||||| |||| Sbjct 2154026 CTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAA 2153968 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC----CAtttttttGTC 37370 | |||| || | | | | || | |||| ||| || ||| || || | | Sbjct 2153967 AAGCTAACAGCC-TCTCCGGATA--TGAAG-ATACTCGTGGATCGCACCACTTAAGCGCC 2153912 Query 37371 CAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttt 37430 |||| || ||| | | || || || ||||||||||| || ||| || || Sbjct 2153911 CAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTC 2153852 Query 37431 tCT-TCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 || || | || | ||||| ||||| || || | ||||| || ||||||||||| Sbjct 2153851 TCAATCGCGTCCT-TGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATATT 2153793 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 |||||||| || ||||| || || ||||| | ||| || | | || || || || Sbjct 2153792 CTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGCT 2153733 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 || || |||| | |||||||| || || |||||||||||||| || |||||||| || Sbjct 2153732 GAAATTCATAGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGCAC 2153673 Query 37610 ATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGA 37669 || || ||||||| | || | |||| | || ||| || |||| || | | Sbjct 2153672 ATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGTGTAC 2153613 Query 37670 TAAATCAACTTCATCAACGGTCCAAAA 37696 || ||| | ||| ||| | ||||| || Sbjct 2153612 TAGATCGAGTTCCTCAGCTGTCCAGAA 2153586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293388678480