Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq112 132 4e-26 >seq112 Length=380982 Score = 132 bits (146), Expect = 4e-26 Identities = 382/585 (65%), Gaps = 2/585 (0%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||||| || |||| || || || || | | ||||| ||| || || Sbjct 85221 AGTGGCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACGTGGATAAATTCACCA 85280 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 ||||||| || || || ||||| | | ||| || || | ||||||||| || ||| Sbjct 85281 GGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTA 85340 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC- 29981 || || || || ||||||||||| |||| | ||||| | |||||| || |||||||| Sbjct 85341 AATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCA 85400 Query 29982 GTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041 | ||| || ||||| || || | ||||||| || || | ||||| | | ||| Sbjct 85401 TTTGCT-ACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTC 85459 Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30101 | |||||||| || ||| ||| ||||| | |||| ||| | || | | | Sbjct 85460 TGCAGGGTTCCACGCCGACAGGATAATGCGACGGTCTGTTGGACTCTTACGTAGCTTTTG 85519 Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 | | | || |||||||| || || || | || || || ||||| ||| || Sbjct 85520 AATAACCTCTTCAAGCTGATCAACACCTTGACCAGTATAATCCGCATGCATGTTCGTATA 85579 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 | ||||| ||||| | ||| || || || || |||||||| || ||||| |||| | Sbjct 85580 TTTAGCTCCAAAATGACGCCATTGAAAGCCATAAACCGGTCCAAGATCTCCTACTTCTCG 85639 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 || || || | | || | | | || | || || ||| | ||||| || | | Sbjct 85640 AGTCTGGAGACCTCGGCTATCTAGATACTCACGAGATCCATTGCCATCCCATATGTGAAT 85699 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| | ||| || | |||||| || || | ||||||| |||||||| Sbjct 85700 ATCCTTTTGCTGCAGCGTTTGAGCATTTGTGTCTCCACTAATAAACCACAATAGCTCCTC 85759 Query 30342 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 | | || | ||| || ||||| ||||| || || | ||||| Sbjct 85760 CGCTACACCTCGCCAGAATACCCTTTTGGTAGTCAGCAATGGAAA 85804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408601853154626