Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq321 91.5 1e-13 >seq321 Length=1809241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| ||||| |||||| ||||| || || || | ||| | || Sbjct 557137 AGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGT 557196 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || || | |||| || ||| Sbjct 557197 CCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCC 557256 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || || ||| | | || |||| |||||| |||| ||| Sbjct 557257 TTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTG 557316 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 557317 ATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 557354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380922919855326