Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq435 122 2e-22 seq1932 107 4e-18 >seq435 Length=396479 Score = 122 bits (134), Expect = 2e-22 Identities = 325/488 (67%), Gaps = 19/488 (4%) Strand=Plus/Plus Query 150287 AACCTAACTGATCTTGCAGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAA 150346 ||| ||| ||| || |||| | || ||| |||||||| | |||||||| || || Sbjct 134951 AACTTAATTGAGCTAGCAGAATCTGGCAAAATTGATCCAGTGATTGGTCGAGACGAGGAG 135010 Query 150347 CTT-GATGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGG 150405 || || || || ||| || || || || |||||| || ||| | || |||| Sbjct 135011 ATTCGACGAGTTA-TTCGCATCCTGTCACGGCGAACCAAGAATAATCCGGTTTTGATTGG 135069 Query 150406 TGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGG 150465 |||||| |||||||| ||||| || || || ||||| || | || || | | || Sbjct 135070 TGAACCTGGTGTTGGAAAAACTGCGATTGTCGAAGGATTGGCTCGCCGTATTGTTGTGGG 135129 Query 150466 TGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGGGTGCATTT 150523 |||||| || || || |||| || || || || |||| |||||||||| || Sbjct 135130 TGATGTACCTGAGTCGCTGAAC-----TGCAAGCTTATTAGTTTGGATATGGGTGCCCTT 135184 Query 150524 ACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAA 150583 | ||||||| |||||||||| ||||| ||||| || ||| | | |||| | ||| Sbjct 135185 ATTGCTGGTGCTAAGTATCGCGGTGAGTTCGAGGAGCGTTTGAAGGCGGTGCTGAAGGAA 135244 Query 150584 CTAAAAGAACGCGATGATG---TTATTCTGTTCATCGATGAAATCCATACTATTATGGGT 150640 | || || || ||| | ||||| |||||||||||||||| || ||| | ||| Sbjct 135245 GTCAAGGACAGCAATGGTAAAATTATTTTGTTCATCGATGAAATGCACTTGATTCTTGGT 135304 Query 150641 GCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACC--TGCTCTAT 150698 || ||| | | || ||| || |||| ||| || | ||||| ||||| Sbjct 135305 GCCGGT-CAAACATCG--GGTGCTATGGACGCTGCAAATTTGCTTAAACCGATGCTC--G 135359 Query 150699 CTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTG 150758 | || |||||| | ||| ||| ||||| ||||| | || || || || | || | | Sbjct 135360 CACGTGGTGAACTGCGTTGCATTGGTGCGACAACGTTGGACGAGTACCGCGAGCATGTGG 135419 Query 150759 AAAAAGAT 150766 | |||||| Sbjct 135420 AGAAAGAT 135427 >seq1932 Length=323 Score = 107 bits (118), Expect = 4e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571 |||||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||| Sbjct 130 TATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCG 71 Query 324572 AACCCGTTTAGCTCCAC 324588 | |||| |||||||||| Sbjct 70 ATCCCGCTTAGCTCCAC 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147543907526676