Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq731 471 9e-129 >seq731 Length=3487 Score = 471 bits (522), Expect = 9e-129 Identities = 355/416 (85%), Gaps = 1/416 (0%) Strand=Plus/Minus Query 27084 ACCGGAGAGACTGCCTTATGGCTCAGGATTACCACCACGGGGTGCGCGTTGTTGAAATCA 27143 ||||||| | ||| ||||||||||||||| |||||||| ||||| || ||||| |||| Sbjct 905 ACCGGAGGGTTCGCCGTATGGCTCAGGATTATCACCACGGTGTGCGTGTCGTTGAGATCA 846 Query 27144 ACGAGGGCACCCGACCTATTACCACGGTGAGCACTGCCATCGTGGGCATGGTCTGCACCG 27203 |||| |||||||| |||||| | || || ||||| || || || | |||||||| |||| Sbjct 845 ACGATGGCACCCGCCCTATTTCAACAGTAAGCACGGCAATTGTAAGTATGGTCTGTACCG 786 Query 27204 GCGATGATGCTGATGCGTCCGTGTTCCCCCTCAATAAGCCGGTCCTGCTGACTGATGTGC 27263 |||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||| Sbjct 785 GCGATGATGCAGATGCGTCCGTGTTCCCCCTCAATAAACCGGTCCTGCTTACCGACGTGC 726 Query 27264 TCACCGCCAGCGGTAAAGCGGGGGAGTCCGGCACGCTGGCCCGCTCGCTGGACGCGATTG 27323 | ||||||||||| ||| | || ||||||||||||||||||||||| ||||| || |||| Sbjct 725 TGACCGCCAGCGGAAAA-CAGGCGAGTCCGGCACGCTGGCCCGCTCTCTGGATGCAATTG 667 Query 27324 CAGATCAGGCAAAACCCGTGACTGTCGTTGTGCGTGTGGCGCAGGGCGAAACCGAAGCGG 27383 | || || |||||||||||||| ||||||||||| || || ||||| ||||| ||||||| Sbjct 666 CCGACCAAGCAAAACCCGTGACCGTCGTTGTGCGCGTTGCTCAGGGTGAAACTGAAGCGG 607 Query 27384 AAACCACCTCCAATATTATCGGCGGCGTAACTTCCGACGGTAAGAAAACGGGCATGAAAG 27443 |||| |||||||| |||||||||||||| || | |||||||| |||||||||||||||| Sbjct 606 AAACAACCTCCAACATTATCGGCGGCGTGACAGCTGACGGTAAAAAAACGGGCATGAAAG 547 Query 27444 CGCTACTGTCGGCGCAGTCGCAGCTCGGTGTCAAGCCGTGCATTCTTGGGGTGCCG 27499 |||| | || |||||||| |||||||| || |||||| |||||||||| |||||| Sbjct 546 CGCTGTTATCTGCGCAGTCCCAGCTCGGCGTTAAGCCGCGCATTCTTGGCGTGCCG 491 Score = 282 bits (312), Expect = 9e-72 Identities = 294/381 (77%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 33499 GGCGGGCCGATCTCTATACCGAAATGCCGGTGAAGGTGACGGGGTTTAAGCAGCCCATAG 33558 |||| ||||||||||| |||||||||||||||||||||| || |||||||||||||| | Sbjct 499 GGCGTGCCGATCTCTACACCGAAATGCCGGTGAAGGTGAGCGGCTTTAAGCAGCCCATTG 440 Query 33559 ACGATGCCGAATGGACCATTACCACCTTGATGCATTCGGTCAGCCCAGATAATGGATTTA 33618 | ||||| || |||||||| ||||| |||| |||| | |||||||| ||||| || |||| Sbjct 439 ATGATGCGGAGTGGACCATCACCACGTTGACGCATACCGTCAGCCCGGATAACGGGTTTA 380 Query 33619 CGACCAGCATGGAGCTTGAAGTAAAGATTGATGATCTTGAAATTGAATAATTGGTTCTCA 33678 ||||||| ||| || ||||| || || ||||| | || |||||| ||| |||| || Sbjct 379 CGACCAGTCCGGATCTCGAAGTGAAAATAGATGAGTTCGACGTTGAATGATTAGTTC-CA 321 Query 33679 ACATTGAATG--ATGATGTATCATTATTGCGATTACGGCAAAAGTGGTGGGATAACAGCA 33736 | ||||| | |||||||| ||||||||||| | || ||| | ||| | | | | Sbjct 320 A-ATTGAGAGCAATGATGTAGCATTATTGCGAACTGGTTAAGAGT-GAGGGCTGAACGAA 263 Query 33737 ATGATGAACTGTCCAGAGTGCGGTCATTCAGCACATACCAGAAGCAGCTTTCAGGTATCA 33796 |||||||| ||||| ||||||||| | || ||||| | || ||||||||||| || Sbjct 262 ATGATGAATTGTCCGATGTGCGGTCAGGCCGCGCATACACGCAGTAGCTTTCAGGTTTCC 203 Query 33797 GCTACGACAAAAGAACGTTACAACCAGTGCCAAAATATAAATTGTGGCTGTACGTTCGTT 33856 | ||| |||||||| |||||||||||| ||||| | || || ||||||||| Sbjct 202 AGTGAGACCAAAGAACGATACAACCAGTGCACCAATATTGAGTGCGGTCATACGTTCGTG 143 Query 33857 ACTCATGAAACGTTTGTACGG 33877 || ||||| |||||||| ||| Sbjct 142 ACGCATGAGACGTTTGTGCGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109048705203676