Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3042 188 1e-42 >seq3042 Length=3267112 Score = 188 bits (208), Expect = 1e-42 Identities = 377/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||||||| |||||| ||||| ||||| || |||||| | || || |||| || Sbjct 2154107 GCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAG 2154048 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||| | || | || || ||||| || |||| ||| ||||| ||||| || Sbjct 2154047 ACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAA 2153988 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAA-GAAGCGTTCTTGTCTG 48308 || ||||| ||||| || || || |||||||| | || | |||| | || || | Sbjct 2153987 AATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTC-CGGATATGAAGA-TACTCGTG-G 2153931 Query 48309 A--GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | | ||| ||||||||| | || || || ||| ||| || || || || || || Sbjct 2153930 ATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGC 2153871 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 || || || | | |||| |||||| | ||| ||| || || | || Sbjct 2153870 ACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATA 2153811 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 || ||| ||||| | |||||| |||||||| || || |||||||| | ||||| Sbjct 2153810 CACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGG 2153751 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 |||||||||||| || ||| || |||||| |||||||| || ||||| ||| Sbjct 2153750 CACCTGCACTTCATTGCTGAAATTCATAGCCAGATTTTCATTGACAATTCCATCACTAGC 2153691 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT-TCC 48605 || || || ||||| ||||| |||| |||| ||||||||||| || || || | || Sbjct 2153690 TGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAG-GCTTGCCC 2153632 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| | ||| | | || || | ||| || | |||||||| || || || | Sbjct 2153631 AGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCT 2153572 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 2153571 TCTTGTACAT 2153562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931495981166080