Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3042 140 6e-28 >seq3042 Length=3267112 Score = 140 bits (154), Expect = 6e-28 Identities = 382/571 (67%), Gaps = 22/571 (4%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||| | ||| |||||||||||||||| || ||| |||||| || || || | ||| Sbjct 2153550 GATGTGTGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTGGACAGCTGAGGAACTCGAT 2153609 Query 25534 CTGGCCAAGGACATGGACGGCTGGT-ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 || | | ||| | | | |||| | || || | || |||||| ||||| | || Sbjct 2153610 CTAGTACACGACCTTAAGGACTGGGCAAGCCTTA-CAAACAACGAGCGCTATTTTATTAA 2153668 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GA 25651 | | ||| | || || || ||||| |||||| || || || || |||||| || | || Sbjct 2153669 GCATGTGCTTGCTTTTTTCGCAGCTAGTGATGGAATTGTCAATGAAAATCTG-GCTATGA 2153727 Query 25652 GATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 |||| || ||||||||| ||| ||||| ||||||||||| || || || | Sbjct 2153728 ATTTCAGCAATGAAGTGCAG---GTGCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATCG 2153784 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAG 25765 | || || ||| | ||||| ||||||||| | |||||| || ||||| || | | Sbjct 2153785 CTATTGAGAATATTCACTCGGAGGTGTATTC---GCTTCTTATCGATACGTATATCAAGG 2153841 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 ||| |||| || | || || |||| || || ||| || || ||| | | Sbjct 2153842 ACGCGATTGAGAAGGACCATCTATTGCGTGCAATTGAAACCATCCCTTGCGTCACAAAAA 2153901 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAG-CGCTACGTTTGGCGAGCGGCT 25883 | || | ||||| | |||||| | | ||| ||| || | | | ||| |||| Sbjct 2153902 AAGCTCATTGGGCGCTTAAGTGGTGC--GATCCACGAGTATCTTCATATCCGGAGAGGCT 2153959 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 | |||| |||||||| || ||||| || |||||| || || || ||| | ||||| | Sbjct 2153960 GTTAGCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGC-TCAATCTTTT 2154018 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| || || ||||| || || |||||| || |||||||| || ||| Sbjct 2154019 GGCTTAAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGG 2154078 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | || ||| | |||| || ||||| ||||| Sbjct 2154079 ATGAAGGTATGCACACGGACTTTGCTTGCCT 2154109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928808087409280