Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq653 190 1e-43 >seq653 Length=2021493 Score = 190 bits (210), Expect = 1e-43 Identities = 300/430 (70%), Gaps = 0/430 (0%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| | ||| || ||||| | |||||| || ||||| | || | | || Sbjct 712446 CTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTC 712505 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || |||||||||||| | ||| | || ||||||| ||| | ||||| |||||||| Sbjct 712506 ATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAA 712565 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 |||||||||||| ||||| | || || ||||||||||| || |||| ||||| || Sbjct 712566 ATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATC 712625 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 ||| ||||| ||||||||||| | |||| | || | ||||| |||| |||| | Sbjct 712626 ATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTA 712685 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 ||||| | || | ||| | || || || |||||||||||||| ||||| Sbjct 712686 ACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAAT 712745 Query 26230 AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 | ||||| | | || |||||| | || |||| ||| |||| | | |||| | || Sbjct 712746 ACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAA 712805 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | ||| || || |||||||| | | | | ||| |||| ||| || | ||| ||||| || Sbjct 712806 AAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGC 712865 Query 26350 ATGAGTATAA 26359 || ||| || Sbjct 712866 GTGGGTAAAA 712875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253030248629150