Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq653 170 2e-37 seq553 91.5 2e-13 >seq653 Length=2021493 Score = 170 bits (188), Expect = 2e-37 Identities = 881/1391 (63%), Gaps = 46/1391 (3%) Strand=Plus/Minus Query 75221 ATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACA 75280 ||| || | || || || | || || ||| | | |||||| | ||| | |||||| Sbjct 712958 ATGATCCTTCGTGTGGCGTTAGGAATTCACAAGAATGACATTAAAGCTGCACTCGAGACA 712899 Query 75281 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 75340 ||||| ||||| ||| | || | ||||| |||||||| ||||||||||| ||| Sbjct 712898 TACGAGTTCATGTCACAAAAGTTTTTTACCCACGCGACACCAACACTCTTCAATGCAGGT 712839 Query 75341 ACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 75400 ||||| | || || | || ||||| ||| | || | |||| || ||||| | Sbjct 712838 ACACCGCGTCCACAATTATCGTCATGCTTTCTTTTGGCAATGCAGGATGATTCAATAGAA 712779 Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460 ||||| |||| || |||| | |||||| || || || |||||||| || ||||| Sbjct 712778 GGTATATATGATACACTTAAACAATGTGCGTGTATTTCGAAATGGGCTGGTGGGATTGGA 712719 Query 75461 ------ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 75514 ||||||| | || | | | ||| | | | |||||||| || || || Sbjct 712718 GTTAGTATGCACAAC----ATCCGTGCGACAAACAGTTAC--ATTCGGGGCACCAACGGC 712665 Query 75515 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 75574 ||| |||| || ||||||||| | ||||| ||||| | || || || ||||| || Sbjct 712664 TCATCGAATGGAATCATTCCAATGTTGCGCGTTTTTAATGATACTGCTCGATATGTGGAT 712605 Query 75575 CAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGAT 75631 |||| || || ||||| || || | || |||| || ||||| |||||||||||| Sbjct 712604 CAAGGTGGTGGTAAGCGCAAAGGATCGTTTGCTATCTATTTAGAACCGTGGCATGCCGAT 712545 Query 75632 ATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGAT 75691 | | || || || || || ||| || || || | || ||| | ||| Sbjct 712544 GTTTTTGAATTTCTGGATTTGCGAAAGAATCACGGCAATGAGCTACATCGTGCCCGTGAT 712485 Query 75692 CTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA 75751 | || | | || ||||| || || || || |||||||| || || | | ||| | Sbjct 712484 TTGTTCTATGCACTATGGATACCGGATCTCTTTATGAAGCGCGTCGAAGCGAATGGCAAG 712425 Query 75752 TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG-ACGCGGTGGGTGAGGAGTT 75810 ||| ||| |||||||| || | || || || || | || | || | |||||| || || Sbjct 712424 TGGAGTCTCTTCTGTCCGAACGAAGCGCCTGGACTTTACGAATGCTG-GGGTGATGAATT 712366 Query 75811 TGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACT-GTAC-CA 75865 || || | || || ||||| ||| |||| || | || || ||| | | | || Sbjct 712365 CGATGCATTATATACTAAGTACGAACAGGATGGACGTGCTCGAAAAACGATTAATGCTCA 712306 Query 75866 GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATG 75925 || || | ||| |||||||| | | |||| || ||||| || |||||| Sbjct 712305 GCAGC-----TATGGTTTGCTATTCTGGACGCTCAGATTGAAACTGGTGTTCCTTATATG 712251 Query 75926 CTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT---CAAG 75982 || ||||| || ||| || ||| ||||| | ||| | || ||||| | Sbjct 712250 CTCTACAAAGACGCTGCGAATCGAAAGTCGAACCAGCAAAATCTTGGCACAATTCGTTCG 712191 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||| ||| | ||| ||| | | || || || | |||||| || |||||| Sbjct 712190 AGC---AATTTATGCTGCGAAGTGATGGAATATACTTCTCCGGATGAAGTCGCAGTTTGC 712134 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTAT 76102 ||||||||||| | ||| | || || | ||| ||||| || |||||| || Sbjct 712133 AATTTGGCATCTGTGGCCTTGCCTAAATTTGTGAATGA------CCGTGTTTTTGACTAC 712080 Query 76103 GAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGA 76162 | ||| | | || | || || || || || || ||| |||||||| Sbjct 712079 CAGAAATTGTACGACGTGGTGAAAATAGTGACGCGCAACCTTAACAAGGTCATTGATGTC 712020 Query 76163 AATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 |||| ||||||||| ||| || |||||| || ||||||||| |||| | || | Sbjct 712019 AATTATTATCCCGTCATAGA-AGCTGAAAAGTCCAACATGCGACACCGACCGGTCGGCAT 711961 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGA 76281 || || || || || || |||| |||||| | ||||| ||||| | Sbjct 711960 TGGCGTCCAGGGACTGGCTGATGCGTTTATTCTCATGAATTACGCGTTTGAGAGTCCTTC 711901 Query 76282 AGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAG 76341 || ||| ||||| ||| ||||| || || || | | ||| |||| || Sbjct 711900 GGCGCGCGAGCTGAATAAAAATATTTTTGAGACGATTTACTATTCTTCCATGGAAACGTC 711841 Query 76342 TTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCA 76401 ||| | || ||| |||| | || |||||||| | || || || || | | Sbjct 711840 AATGGAAATTGCAAAAGAATTAGGTCCTTACGAGACATTCCAAGGATCACCAGCAAGCAA 711781 Query 76402 AGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC--AAC--TACGACTGGG 76457 ||| | |||||||||| ||||||| | || | ||| || || | || |||| Sbjct 711780 AGGCATTTTTCAGTTTGACATGTGGGGA-GTCACTCCATCGTCGGGACTTTGGGATTGGG 711722 Query 76458 ATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 76517 ||| |||||| || | | | | | ||| | || || || || | || || | Sbjct 711721 ATGCACTCAAGAAAAAGGTTATGCAACATGGTTTACGGAATTCGCTACTGGTAGCCCCTA 711662 Query 76518 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAA 76577 |||||||||| || || || || || ||||| || ||||||| | || ||||| || Sbjct 711661 TGCCAACAGCATCTACAGCTCAGATTTTGGGCAACAATGAATCAATCGAGCCATATACTT 711602 Query 76578 CAAACATCTAC 76588 | ||||| ||| Sbjct 711601 CTAACATGTAC 711591 >seq553 Length=2240492 Score = 91.5 bits (100), Expect = 2e-13 Identities = 256/381 (67%), Gaps = 18/381 (5%) Strand=Plus/Minus Query 13550 ACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGT 13609 || || ||||| ||||| ||||| || || | || ||||||||| || | | || Sbjct 1512601 ACTGGCATTCCTAAGTTAGATGATGCCAATCACGCTGGTACGGCAAAAAGTAAGGATTGC 1512542 Query 13610 ACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTC 13669 || || || | ||||| || |||||||||||||| | || || | |||||| ||||| Sbjct 1512541 ACGCTGATCATTACAGAAGGAGATTCGGCTAAAACAGTGGCTGTGGGTGGTCTCGCTGTC 1512482 Query 13670 GTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGG-TAAATGTAAGAATGTTCGGGA 13728 ||||| || || | || || || || ||| | || || ||||| | || ||||| || Sbjct 1512481 GTTGGACGAGACTATTATGGAGTCTTTCCATTACGTGGAAAAATGCTA-AACGTTCGTGA 1512423 Query 13729 CGCT--TCGGTGGCACAGCTCACATCAAACCAGG-AGTTCAACGATCTCAAGAAGATCCT 13785 ||| | | ||| | | | | ||| ||| | ||||| || | ||||| || Sbjct 1512422 AGCTAGCCACTCGCAGATTTTAAA--GAACGAGGAAATTCAA-AATGTGGTCAAGATTCT 1512366 Query 13786 TGGTCTTCAACAAGGAAAAGAC-TACCAAGATGTTTCTGAA---CTT-CGCTATGGTCGT 13840 ||||| |||| | | |||| ||| | || | || ||| |||||||| | | Sbjct 1512365 TGGTC-TCAAGTATGGTCAGACGTACGA----GTCTACAAAGGGCTTGCGCTATGGCCAT 1512311 Query 13841 CTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAAT 13900 | ||||||||||||||| || | ||||| ||| || |||||||| | | ||| Sbjct 1512310 TTAATGATTATGACAGATCAGGACCACGATGGAAGTCATATTAAGGGTCTTGTGATCAAT 1512251 Query 13901 ATGATCCACTACTTCTGGCCC 13921 | || ||| | ||||||||| Sbjct 1512250 CTTATTCACCATTTCTGGCCC 1512230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546020586560