Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq321 96.9 6e-15 >seq321 Length=1809241 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || ||||| | ||| | || | |||||| ||| ||||| || | Sbjct 557127 ACCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGC 557186 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| | || || | || || ||||||||||| | | ||| ||||||||||| Sbjct 557187 AAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || ||||| | || ||||| || | || |||| || || Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 557306 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || || || | || || | ||| ||||||||||| Sbjct 557307 GTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905100224499600