Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq653 161 3e-34 seq291 122 3e-22 seq3101 118 3e-21 seq3042 95.1 4e-14 seq322 87.8 5e-12 >seq653 Length=2021493 Score = 161 bits (178), Expect = 3e-34 Identities = 280/405 (69%), Gaps = 9/405 (2%) Strand=Plus/Plus Query 155972 CTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTC 156031 ||||| |||||||||||| || | || | ||||| || ||| | ||| || || Sbjct 712503 CTCATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTC 712562 Query 156032 CAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGT 156088 | ||| |||||||| || || | ||| ||||| ||||| ||||| |||||||| Sbjct 712563 TAAATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGT 712622 Query 156089 CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 | ||| || || | | ||| ||||| || ||||| || | ||| ||||| || ||||| Sbjct 712623 ATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAAT 712682 Query 156149 ATGCGAACCAGATGAG---CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 | ||| || || | || || ||| | |||||| ||||| | |||||| Sbjct 712683 GT---AACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTT 712739 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| || |||| || | |||| | |||||||| || |||||||| | ||| Sbjct 712740 CGAAATACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCAT 712799 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 || | ||| |||| || |||||| || || ||||| || || ||||| ||||| || Sbjct 712800 TGCCAAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGG 712859 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 ||| || || ||||| |||| | ||||| | ||||||||||| Sbjct 712860 TGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTC 712904 >seq291 Length=1316030 Score = 122 bits (134), Expect = 3e-22 Identities = 194/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || ||||| ||| || ||| || || ||||||||||| | || ||||| Sbjct 797680 CGGCGCTGGATGTAACCTGTTTCAGCTGTCTTCACGGCTGTATCAATCAACCCTTCACGA 797621 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||||||||||| |||||||| | || | |||| || || || | | ||| | || Sbjct 797620 CCACCCATAGCGTGGAAGAAAAATTCCTGCGGTGTTAAGCCTTTAAGATACGAGTTTTCC 797561 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||||||||| || || | ||| || ||| |||| ||||| || | | Sbjct 797560 ACGAAACCACGGCTTTCAGGGCCCAGATCATC---TTTGCCGTAGTGCGGCAGCGTACGG 797504 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | | ||||| |||||||| ||||| ||||| || |||||||||| || | ||| Sbjct 797503 TGATTAAAACCGTAAGGGATACGTTTTCCCTCAACATTTTGCTGTCCCACACAAGCAATA 797444 Query 302830 ATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||||| || || || | | | |||||| || |||| Sbjct 797443 ATCTGAGATATGTTAATAAAAGAGCCCTTTGAACCAG 797407 >seq3101 Length=2481951 Score = 118 bits (130), Expect = 3e-21 Identities = 412/625 (66%), Gaps = 36/625 (6%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 || |||| ||||| ||| ||||||||| || | |||||||| || | || || | || Sbjct 1892255 GCAATAATTCCACAAATATCACACACATGAACACGATAAGCATCCGAATTCG-CAAAAAG 1892197 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| || | ||| || | ||| || || |||| ||||||||| ||||||||||| Sbjct 1892196 ACGATCCATTAAGAAATTAGCAGAACCATGCGATATCAAACAATCACGTTCCATTTCACC 1892137 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAG-TGAGAT--TAAC 251579 | ||| | |||||| || ||||| | || || ||| ||||| | | | || |||| Sbjct 1892136 CATACGCAAACCACCTTCACGAGCACGTCCTTCCATAGGTTGACGTGTTAACATTGTAAC 1892077 Query 251580 CATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 ||||| || || ||| |||||||| |||||||| || | ||| || || Sbjct 1892076 ---TGGACCACGTGAACGAGAATGAATCTTATCATCAACCATATGTTTCAAACGTTGATA 1892020 Query 251640 GAATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 || | ||||| || || || | | || | |||||| || | ||||||| Sbjct 1892019 AAACGTTGGACCAATAAAAATCTGGGCTGTCAAACGACGTCCAGTATGACCACTATACAT 1891960 Query 251700 AACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAAT 251759 ||||| ||||||| || ||| ||||| || || | ||| |||| |||| Sbjct 1891959 CACTTCATTTCCATGTTTTTGATATCCAAGATTATGCA------AAG---TATCCGCAAT 1891909 Query 251760 --CTTGAA---TTTGCTAA--AACTGGTG--CCGTCTCCGTAAAGACCCATTTGA-ATCA 251809 |||||| || | | || ||||| | ||||| | | ||| ||||| || | Sbjct 1891908 GGCTTGAACCGTTACATCAGTAAATGGTGTAGCATCTCCTTCATCACCTGTTTGAGATGA 1891849 Query 251810 ACACTTTGCCTA--AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGC 251867 | ||||| || | ||| || | | || | | ||||||||| |||||||| Sbjct 1891848 A-ACTTTACCAAGTAAACATTCAACT--AAATGTCCAACAGTCATACGTGATGGAATAGC 1891792 Query 251868 ATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTC 251927 ||| ||||||| | || || ||| | | || || | || || ||||||| ||| | Sbjct 1891791 ATGAGGATTGACAACAATATCAGGTGTAATCCCTTCCACTGTAAACGGCATAT-CTTCTT 1891733 Query 251928 CTCAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCA 251985 | || |||| ||||||| || |||||||||||||| || || || ||||||||| Sbjct 1891732 GACGAT-ATGTCATTCCAATCGTACCCTTTTGTCCGTGTCGTGACGCAAATTTATCACCA 1891674 Query 251986 ATAACAGGACGGCGAACACTACGAA 252010 || ||| |||| | |||||| Sbjct 1891673 ATTTGAGGTATACGAATATTACGAA 1891649 Score = 91.5 bits (100), Expect = 4e-13 Identities = 349/534 (65%), Gaps = 28/534 (5%) Strand=Plus/Minus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||| || | | || ||| || | |||| ||||||||||||||||||||| ||||||| Sbjct 1892188 TTAAGAAATTAGCAGAACCATGCGATATCAAACAATCACGTTCCATTTCACCCATACGCA 1892129 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCT 233378 |||||| ||| | | || | | | |||||| ||||| | || |||||| Sbjct 1892128 AACCACCTTCACGAGCACGTCCTTCCATAGGTTGACGTGTTAACATTGTAACTGGACCAC 1892069 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGAC 233438 | | |||| ||| ||| ||||| | ||||||||| |||| | |||| | |||| Sbjct 1892068 GTGAACGAGAATGAATCTTATCATCAACCATATGTTTCAAACGTTGATAAAACGTTGGAC 1892009 Query 233439 CAATAAATAGTTCTGCG-TGT-AATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATT 233496 ||||||| | |||| | ||| || | |||| | ||| || || | |||||||| Sbjct 1892008 CAATAAAAA--TCTGGGCTGTCAAACGACGTCCAGTATGACCACTATACATCACTTCATT 1891951 Query 233497 ACCCGATGAATT--GTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGA 233554 || ||| || || |||| || | | | || || | ||| ||| | Sbjct 1891950 TCC--ATGTTTTTGATATCCAAGAT-TATGCAAAG-------TATCCGCAATGGCTTGAA 1891901 Query 233555 CCTTT--ATTAGCAAACGCAGTACAATCACCAAAACCACCATACGTCGCACACG---CTT 233609 || || || || ||| | ||| ||| || | |||| || | | | ||| Sbjct 1891900 CCGTTACATCAGTAAATGGTGTAGCATCTCCTTCATCACC---TGTTTGAGATGAAACTT 1891844 Query 233610 TACCCATTAAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGAT 233669 |||| | |||| ||| | || || || | |||||| | ||| | ||| || |||| Sbjct 1891843 TACCAAGTAAACATTCAACTAAATGTCCAACAGTCATACGTGATGGAATAGCATGAGGAT 1891784 Query 233670 TGATAATTAAATCTGGACGTACTCCC-TCCGATGTAAAAGGCATATCTTTTTCAGGGATT 233728 ||| || | ||| || ||| |||| ||| |||||| |||||||||| || | | | Sbjct 1891783 TGACAACAATATCAGG-TGTAATCCCTTCCACTGTAAACGGCATATCTTCTTGACGATAT 1891725 Query 233729 ATCAGTCCAACTGTTCCCTTTTGGCCGCATC-TACTACAGAATTTATCACCCAT 233781 ||| ||||| || |||||||| ||| || | || ||||||||||| || Sbjct 1891724 GTCATTCCAATCGTACCCTTTTGTCCGTGTCGTGACGCA-AATTTATCACCAAT 1891672 >seq3042 Length=3267112 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 133517 GCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTT 133576 |||||||||| ||||||||| ||||||||| || | |||||||| || ||||||||| Sbjct 2153964 GCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGCTCAATCTTTTGGCTT 2154023 Query 133577 AAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAG 133636 || ||||||||| | | ||||| || | ||||| || || || ||| |||| || Sbjct 2154024 AAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGGATGAA 2154083 Query 133637 GCACTTCACACCGAATTTGC 133656 | | ||||| || ||||| Sbjct 2154084 GGTATGCACACGGACTTTGC 2154103 >seq322 Length=2746546 Score = 87.8 bits (96), Expect = 5e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 233285 ATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGACCTACCCTGG 233344 |||| |||||| |||||||||||||||| ||||||||||||||| || | ||| | Sbjct 1805679 ATCAGACAATCGCGTTCCATTTCACCAAGACGCAGACCACCATCTCGGGATCGACCTTCA 1805738 Query 233345 ACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATTTTATCTTTA 233404 || ||||||||| | ||||| ||| || || |||| ||| | || || || | Sbjct 1805739 GTTGGTTGACGAGTCAGAACAGCTCTAGGTCCACGAGCGCGAGCGTGCATCTTGTCCATC 1805798 Query 233405 ACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 |||||||| || ||| | || ||| ||||| || |||| Sbjct 1805799 ACCATATGTTTGAGTTTTTGGTAGTAAATTGGACCCATGAATA 1805841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471757972069594