Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3042 114 2e-19 seq428 91.5 2e-12 >seq3042 Length=3267112 Score = 114 bits (126), Expect = 2e-19 Identities = 196/283 (69%), Gaps = 11/283 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||||| || | || || |||| || || ||||| || || ||||| Sbjct 2154086 ACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTT 2154027 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||||||||| | |||||| ||| |||||||| || ||||| || || ||||| Sbjct 2154026 CTTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGAT----CCACTTCATCG 869354 | | |||| ||| | | | || || | || || ||| |||||| | || Sbjct 2153966 AGCTAACAGCCTCTCCGGATA--TGAAGA-----TACTCGTGGATCGCACCACTTAAGCG 2153914 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 |||| | || ||||| | || | || | || || || || || || || ||||||| Sbjct 2153913 CCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCT 2153854 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | || || |||||||| ||| || ||||| || |||||||| Sbjct 2153853 TCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATA 2153811 >seq428 Length=1405462 Score = 91.5 bits (100), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || |||||||| ||| || | ||| | ||||| || ||||| |||||||||||||| Sbjct 154493 GTTACGTGCGTTGTTCGTAATGCGCCCGTGGGCCTTGGTGAGCCATGCTTTGACAAGATG 154552 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||| | ||| || ||||| ||| |||| || || || || |||||||| || |||||| Sbjct 154553 CAGGCTGTGCTTGCTCACGCAATGATGTCCATTCCAGCTACTAAGGGATTTGAAATTGGC 154612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106879711472354