Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq653 123 2e-23 seq321 82.4 7e-11 >seq653 Length=2021493 Score = 123 bits (136), Expect = 2e-23 Identities = 322/483 (67%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| ||||| | ||||||| |||| || |||||||| ||||| | || | | |||||| Sbjct 712428 GCCATTCGCTTCGACGCGCTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATC 712487 Query 139449 GCGCGCCTTCT-TATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 || || | || || | || || | | || || | || || |||||||| Sbjct 712488 ACGGGCACGATGTAGCT--CATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACA 712545 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCAC---CTTGA 139563 || || ||||| ||||| | |||||| || | | ||||| || || |||| ||||| Sbjct 712546 TCGGCATGCCACGGTTCTAAATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGA 712605 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || || | ||| ||| || ||| || ||||||||||| || | || ||| || Sbjct 712606 TCCACATATCGAGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAG 712665 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 |||||||||| || ||| |||||| || |||| || || | | | | || || Sbjct 712666 CCGTTGGTGCCCCGAATGTAACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATC 712725 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAA-TGTCTCGTATATACCTCTTA 139741 || || | |||| || || | ||||| || | ||| ||| || ||||||||| || Sbjct 712726 CCACCAGCCCATTTCGAAAT--ACACGCACATTGTTTAAGTGTATCATATATACCTTCTA 712783 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 | || |||||||| | | |||||||||||||| | ||| || | || || | Sbjct 712784 TTGAATCATCCTGCATTGCCAAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTG 712843 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | || || || || ||||||| || || | | || ||||| || ||||| || | Sbjct 712844 CATTGAAGAGTGTTGGTGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCT 712903 Query 139862 CGA 139864 ||| Sbjct 712904 CGA 712906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| | || | | | |||||| |||||||| || ||||| ||| Sbjct 711535 TCTTTCATCAGATACTTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTAC 711594 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 ||||| || | ||||| | ||||| ||||| |||| ||||||||| || | || Sbjct 711595 ATGTTAGAAGTATATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCT 711654 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG 138644 || ||||| || |||| || |||||||||||||| || Sbjct 711655 GTTGGCATAGGGGCTACCAGTAGCGAATTCCGTAAACCATG 711695 >seq321 Length=1809241 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || ||||| || || || | | Sbjct 557354 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAGCCGTCG 557295 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || || || ||||| ||||| || || || || || Sbjct 557294 GACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTGACCAG 557235 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||||| || ||| | | | | || |||||| Sbjct 557234 CAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGACTATAAC 557175 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| || || ||||| || || | || ||||| |||| || || || Sbjct 557174 ATTCAGAAAGAGTCGACGCTTCATCTTGTATTGCGTCTGCGTGGTGGTGG 557125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879817797360