Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3042 138 2e-26 seq3101 116 6e-20 seq653 86.0 1e-10 >seq3042 Length=3267112 Score = 138 bits (152), Expect = 2e-26 Identities = 229/329 (70%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || ||||| || | || || ||||| || || ||||| || || ||||| Sbjct 2154086 ACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTT 2154027 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||||||||| | ||||| ||| |||||||| || ||||| || || ||||| Sbjct 2154026 CTTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT-GATCCACTTCATCGCCC 794518 | | |||| ||| | | | | || ||| | | | | |||||| | ||||| Sbjct 2153966 AGCTAACAGCCTCTCCGGATATGA----AGATACTCGTGGATCGCACCACTTAAGCGCCC 2153911 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | || ||||| | || | || | || || || || || || || |||||||||| Sbjct 2153910 AATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCT 2153851 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || |||||||| || || ||||| || ||||| || ||| ||||| || || | Sbjct 2153850 CAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATATTCT 2153791 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || ||||| || ||||| || || ||| Sbjct 2153790 CAATAGCGATTTGAAAGCCGTAGAAACAG 2153762 >seq3101 Length=2481951 Score = 116 bits (128), Expect = 6e-20 Identities = 139/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| |||||||| || || || || ||||||||| |||| || || || ||| || Sbjct 1424821 TTGGTCACGGCCTTCGTGCCTTCGGACACGGCGTGCTTGGCGAGCTCACCCGGCAGCATG 1424762 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGTGCGCG 1485592 || ||||| || ||||| ||||||||| | ||| |||||| |||||| ||||| Sbjct 1424761 AGTCGCACAGCTGTCTGAATCTCGCGGCT--CGAAAGTGTTGACTTCTTGTTGTAGCGCG 1424704 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 ||| || ||||| | | |||| || |||| |||||||| | || |||||||||| Sbjct 1424703 ACAGCTTTCCAGCCTCTGAGGCGATACGCTCGAATATGTCGTTTATGAATGAGTTCATGA 1424644 Query 1485653 TCGACAT 1485659 ||||||| Sbjct 1424643 TCGACAT 1424637 >seq653 Length=2021493 Score = 86.0 bits (94), Expect = 1e-10 Identities = 202/305 (66%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || ||||| || || || || ||||| ||||| | ||| || | | || || || Sbjct 712603 TGATCCACATATCGAGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGAT 712662 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||||||||||| | ||| | | || || | |||||| || || Sbjct 712663 GAGCCGTTGGTGCCCCGAATGTAACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCA 712722 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || ||| || || || ||| || | ||| || || || || || || || Sbjct 712723 ATCCCACCAGCCCATTTCGAAATACACGCACATTGTTTAAGTGTATCATATATACCTTCT 712782 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || || || ||| ||| |||| |||||||| ||||| ||| || |||| || || Sbjct 712783 ATTGAATCATCCTGCATTGCCAAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCT 712842 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 ||||||||||| || || ||||| || | ||| ||| |||||| |||||| || Sbjct 712843 GCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTC 712902 Query 2073841 GCGAG 2073845 |||| Sbjct 712903 TCGAG 712907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915910043638118