Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq731 129 1e-25 >seq731 Length=3487 Score = 129 bits (142), Expect = 1e-25 Identities = 180/251 (72%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 15985 GACTATCATCATGGCGTGCAGGTGCTGGAGATTAACGACGGCACCCGCGTCATTTCCACC 16044 || ||||| || || |||| || | ||||| ||||| ||||||||| ||||| || Sbjct 879 GATTATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACA 820 Query 16045 GTATCCACGGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAACCTTC 16104 ||| |||||| ||||| | |||||||| || | | ||||| |||||| ||| Sbjct 819 GTAAGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTGTTC 760 Query 16105 CCCCTCAATAAACCGGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGTAAA 16164 ||||||||||||||||| ||| ||||| | |||| || ||| | | ||| | || | Sbjct 759 CCCCTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCGGAAA-ACAGGCGAG 701 Query 16165 ACAGGCACGCTGGCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAACCGGTCACCGTT 16224 | ||||||||||| || || | || || || ||||| ||||||| || ||||| Sbjct 700 TCCGGCACGCTGGCCCGCTCTCTGGATGCAATTGCCGACCAAGCAAAACCCGTGACCGTC 641 Query 16225 GTCGTGCGTGT 16235 || ||||| || Sbjct 640 GTTGTGCGCGT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107483963959960