Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq731 98.7 2e-16 >seq731 Length=3487 Score = 98.7 bits (108), Expect = 2e-16 Identities = 191/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 15848 ACCGCAGGAGTTC-CCTCATGGCCACCGACTACCACCACGGCGTACGCGTCATCGAAATC 15906 |||| ||| |||| || ||||| || || |||||||| || || ||| | || ||| Sbjct 905 ACCGGAGG-GTTCGCCGTATGGCTCAGGATTATCACCACGGTGTGCGTGTCGTTGAGATC 847 Query 15907 AACGGCGGCGTGCGTCCGATCCGCACTGTGGCCACCGCTATCGTCGGCGTCGTCTGCACC 15966 |||| ||| || || || || || ||| || || || | | ||||| ||| Sbjct 846 AACGATGGCACCCGCCCTATTTCAACAGTAAGCACGGCAATTGTAAGTATGGTCTGTACC 787 Query 15967 GCGCAGGACGCAGACGCCACGCTGTTCCCCCTCGACCGACCGGTGCTGCTGACCGACGTG 16026 | | || ||||| || | ||||||||||| | |||||| ||||| ||||||||| Sbjct 786 GGCGATGATGCAGATGCGTCCGTGTTCCCCCTCAATAAACCGGTCCTGCTTACCGACGTG 727 Query 16027 CTGGGCGCCGTCGGCAAGGCCGGCACCAGCGGCACGCTGCGCGCCACGCTGCAGGCCATT 16086 ||| |||| ||| || | ||| |||||||||| | | | ||| | || ||| Sbjct 726 CTGACCGCCAGCGG-AAAACAGGCGAGTCCGGCACGCTGGCCCGCTCTCTGGATGCAATT 668 Query 16087 GCCGACCAGGCCAACGCCATTACCGTGGTGGTGCGCGT 16124 |||||||| || || || | ||||| || |||||||| Sbjct 667 GCCGACCAAGCAAAACCCGTGACCGTCGTTGTGCGCGT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107154376336028