Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 2e-12 >seq7 Length=498278 Score = 89.7 bits (98), Expect = 2e-12 Identities = 281/430 (65%), Gaps = 4/430 (1%) Strand=Plus/Minus Query 188764 AATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCT 188823 |||||| | ||||||| ||||| || ||||| ||||| ||||| ||| | || || ||| Sbjct 245114 AATGTTATGCTAGTTGGACCTACCGGATCAGGCAAAACGTTATTAGCTAAGACGTTAGCT 245055 Query 188824 -GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTA 188882 ||| | | | || || | | || | ||||| || | || || | |||||||| Sbjct 245054 AGATTAGCAA-AGGTCCCGATTGTCATTGCCGATGCCACGTGCTTGACGCAGGCTGGTTA 244996 Query 188883 TGTAGGTGAAGATGTGGAAAACGTATTGCTTCGT-TTAATCCAAGCAGCTGATTACGATA 188941 ||| || || ||||| || || ||| || || ||| |||| ||| |||| | Sbjct 244995 TGTGGGCGAGGATGTTGAGTCGGTGTTGTTTAAACTTTATC-AAGCTGCTAATTATAACT 244937 Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001 | ||| || | ||||| || || ||||| || || | || |||||| | | || Sbjct 244936 TGGAAGCGACGCAGCGTGGTATCGTCTATATTGACGAGATTGACAAAATTACGCGTAAGA 244877 Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061 |||| ||| | || |||||||| ||||| || || || ||||| | |||| Sbjct 244876 GTGAAAATGTGAGTATTGCGCGTGATGTATCCGGCGAGGGCGTTCAACAAGCCCTGTTAA 244817 Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121 | ||| ||||||| | | ||| || ||| ||||||| || || | || | | Sbjct 244816 AGATCCTTGAAGGAAGCACGGTGAATGTGCCTGAAAAAGGTGGGCGCAAGAATCCGCGCG 244757 Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATG 189181 || || || || ||||| || |||||||||||| ||| || || || | || Sbjct 244756 GCGAGCATATTTCTATTGACACAACCAACATCTTGTTTATTTGTGGCGGTGCATTCGCTG 244697 Query 189182 GTCTTGAAAA 189191 | | ||||| Sbjct 244696 GATTGGAAAA 244687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591845906734976