Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_024146.1 Length=56702 Score E Sequences producing significant alignments: (Bits) Value seq2887 80.6 1e-10 >seq2887 Length=1431973 Score = 80.6 bits (88), Expect = 1e-10 Identities = 188/280 (67%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 4160 ACACCGCGCGACTCCATGCACATATGTTTTGCATCGATGTAGACACACACAGCTTTCGGG 4219 ||||| ||| |||| ||||| ||| | || || ||| ||| ||| | || || Sbjct 1296329 ACACCACGCATGACCATACACATGTGTGTAGCTTCAATGACCACAGCAACACCCTTAGGC 1296388 Query 4220 TCTAAGTGTTCCACGATAGCATCCGCAATCTGATTAGTCAGACGTTCTTGGACTTGCAAA 4279 || | | ||| ||||||| |||||||| || || || ||||||||||| || ||| Sbjct 1296389 TCAATGACACCCATGATAGCAGTAGCAATCTGCTTTGTAAGTCGTTCTTGGACCTGTAAA 1296448 Query 4280 CGTCGAGCGAAAGCATCAACTACCCGAGATAACTTGCTGAGACCGACGATTTTTCCATTT 4339 || |||| || | ||| ||| || | | || ||||| || | | ||||||||| Sbjct 1296449 CGACGAGAAAAGACTTCACTTACTCGTGCAAGTTTACTGAGTCCCAGAACCTTTCCATTT 1296508 Query 4340 GGGACATACCCAACCACTGCA--TGACCAATAATAGGAGCCATGTGATG--CTCACAATG 4395 || | ||||||| |||| | ||| | | || |||||||||| | |||| || Sbjct 1296509 GGTATGTACCCAA--TGTGCACTTTTCCAGTGAATGGTACCATGTGATGTTCACACATTG 1296566 Query 4396 ACTATATACAGGGATATCACGGACGATGACCATTTCATCA 4435 | ||| | | ||| || | || || ||||| |||||| Sbjct 1296567 A--ATAGAGATCGATGTCTCTAACAATAACCATCTCATCA 1296604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181317991480416