Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq321 111 3e-19 seq252 107 4e-18 >seq321 Length=1809241 Score = 111 bits (122), Expect = 3e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||||| || | || || || || |||||||| || ||||| || | Sbjct 557127 ACCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGC 557186 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||| || || || |||||||| || || | || || || || || Sbjct 557187 AAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 || |||||||| || ||||| || ||||| ||||| ||||| | || || || | Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCA 557305 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || ||||||||||| | ||||| || || ||||||||| Sbjct 557306 CGTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATT 557355 >seq252 Length=912309 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || ||||| || || | | || || || || || || |||||| Sbjct 785583 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCTTCC 785642 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| ||||| ||| || ||||| ||||| | ||| |||||| || ||||| || Sbjct 785643 TTATCCTGAATTTTTTGCTTGACATTGTCAATGCTGTCAGAAGGTTCCACATCCAACGTG 785702 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || |||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 785703 ATGGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCATGATT 785744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787423111918