Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq321 120 3e-22 seq653 116 4e-21 seq252 114 1e-20 >seq321 Length=1809241 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | | || | | | || |||||||||||||| Sbjct 557158 GTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCA-TCTTCGAGCTGCTTGCC 557216 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || ||||||||||| || || || ||||||||||| || || ||||| Sbjct 557217 AGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTCTGCTT 557276 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||||||||| | |||| ||| ||||| || || || Sbjct 557277 GACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTGCCTGTAAGGGT 557336 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 557337 CTTGACGAAAATCTGCAT 557354 >seq653 Length=2021493 Score = 116 bits (128), Expect = 4e-21 Identities = 355/543 (65%), Gaps = 23/543 (4%) Strand=Plus/Plus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| |||||||||||||||||||| ||| | ||| || ||| ||||| |||| Sbjct 711247 CGCATGTAGTACATGCCCGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTA 711306 Query 148014 ATGAGCGTGTAC-----GTCGGGTGCGGCACAAACAGA---TTAAACGACTGGCTCTGGT 148065 | || ||| ||||||| | ||| || || | ||||||||||||| Sbjct 711307 A-----GTTTACTAATGGTCGGGTCAG---CAATGTGAATGTTCAGCGACTGGCTCTGGC 711358 Query 148066 CAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGG 148125 ||| ||||||| || || || | ||| || | | ||| || || ||||| Sbjct 711359 AAATATACGCGCCTCGATCGGCTGACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACA 711418 Query 148126 CCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGC 148185 | ||||||||| ||| | ||||||||| | | ||| || ||||| || | Sbjct 711419 CAGTCTTGTACTTTTCCTTCACCGCCTCGGGAATGGCTTTGATCTTTTGAACCGACCCAC 711478 Query 148186 GGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG--AGCTCGATCAGGTC 148243 | ||||| || || |||| || || | || || || | || || || || Sbjct 711479 TATCGTTCAAAATTTGGTTTCGCACTT-GTG-GCGTCCAGATTCCTAATTCAATTAGCTC 711536 Query 148244 ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACAC 148303 | |||||||||| ||| || | | ||| |||||||| | |||||| || |||| Sbjct 711537 TTTCATCAGATACTTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACAT 711596 Query 148304 GTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGT 148363 ||| ||| | || || | || || ||||||||||||||||| || || | ||| || Sbjct 711597 GTTAGAAGTATATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGT 711656 Query 148364 GGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAG 148423 ||||| |||||||| ||||| || || ||||| | | | | || ||| || Sbjct 711657 TGGCATAGGGGCTACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAG 711716 Query 148424 AGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || |||| ||||| || || ||| || || || ||||||||| |||| | ||| Sbjct 711717 TGCATCCCAATCCCAAAGTCCCGACGATGGAGTGACTCCCCACATGTCAAACTGAAAAAT 711776 Query 148481 GCC 148483 ||| Sbjct 711777 GCC 711779 >seq252 Length=912309 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| |||| | ||||||||||| || || || |||||||| Sbjct 785586 TCCTCAAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTA 785645 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || || |||||||||| | |||| |||| | || ||||| || | |||| | Sbjct 785646 TCCTGAATTTTTTGCTTGACATTGTCAATGCTGTCAGAAGGTTCCACATCCAACGTGATG 785705 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||||| ||| || || |||||||||||| Sbjct 785706 GTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCATG 785741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401692792880