Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq653 206 6e-48 seq3042 87.8 4e-12 seq321 84.2 5e-11 >seq653 Length=2021493 Score = 206 bits (228), Expect = 6e-48 Identities = 439/647 (68%), Gaps = 15/647 (2%) Strand=Plus/Minus Query 110286 CGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGT 110345 ||||||| ||| |||||||||||| || || || || || || | ||| | ||||| Sbjct 713051 CGTGACTTTGAGTATGACTATTTTGGCTTTAAGACACTCGAGCGAGGGTATCTCTTTCGT 712992 Query 110346 GTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATT 110405 || ||||| | | | || || |||||||| ||| | |||||||| ||| | || ||| Sbjct 712991 GTAAATGGAAAAGTTGTCGAGCGACCTCAACAGATGATCCTTCGTGTGGCGTTAGGAATT 712932 Query 110406 CATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT 110465 || |||| |||||||||| | || || || || | | || | || ||| | Sbjct 712931 CACAAGAATGACATTAAAGCTGCACTCGAGACATACGA-GT-TCATGTCACAA--AAGTT 712876 Query 110466 ATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTC 110521 || || || || || || || || || ||||| || | |||||| | || Sbjct 712875 TTTTACCCACGCGACACCAACACTCTTCAATGCAGGTACACCGCGTCCACAATTATCGTC 712816 Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 ||||||||| | | ||| | |||||||| || |||||||| |||||| | |||||| | Sbjct 712815 ATGCTTTCTTTTGGCAATGCAGGATGATTCAATAGAAGGTATATATGATACACTTAAACA 712756 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 | ||| |||||| ||| |||| || ||||| || | || | || || | Sbjct 712755 ATGTGCGTGTATTTCGAAATGGGCTGGTGGGATTGGAGTTAGTATGCACAACATCCGTGC 712696 Query 110642 AA-AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | || || | ||| || | | || | | || | |||| | |||||||||| Sbjct 712695 GACAAACAGTTACATTCGGGGCACCAACGGCT-CATCGAATGGAATCATTCCAATGTTGC 712637 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCAT 110757 | || || || || ||||| ||||||| ||||||||||| ||| | || || || | Sbjct 712636 GCGTTTTTAATGATACTGCTCGATATGTGGATCAAGGTGGTGGTAAGCGCAAAGGATCGT 712577 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA 110817 ||||||||||| | ||||| |||||| | ||| | |||||||| | || | || || | Sbjct 712576 TTGCTATCTATTTAGAACCGTGGCATGCCGATGTTTTTGAATTTCTGGATTTGCGAAAGA 712517 Query 110818 ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATT 110877 |||| || ||| ||| | || |||||||| || |||||| | ||||| | ||| Sbjct 712516 ATCACGGCAATGAGCTACATCGTGCCCGTGATTTGTTCTATGCACTATGGATACCGGATC 712457 Query 110878 TATTCATGAAACGTGTTCAAGAAAATGGCATGTG--GTCTCTTATGT 110922 | || ||||| || || ||| ||||||| ||| ||||||| ||| Sbjct 712456 TCTTTATGAAGCGCGTCGAAGCGAATGGCAAGTGGAGTCTCTTCTGT 712410 >seq3042 Length=3267112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131865 TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGC 131924 ||||||||||| || || ||||| || || ||||| | ||||| | |||||||||| Sbjct 2153962 TAGCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGCTCAATCTTTTGGC 2154021 Query 131925 TTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATG 131984 ||||||||||||| |||||||||| || || || ||| | |||| | |||| Sbjct 2154022 TTAAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGGATG 2154081 Query 131985 AAGCATTGCATACTGAATTTGCT 132007 ||| |||| || || |||||| Sbjct 2154082 AAGGTATGCACACGGACTTTGCT 2154104 >seq321 Length=1809241 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345 ||||| ||||||||| |||| || | ||| ||| || || || ||| | | Sbjct 1172155 AAATTGGAGATATTGTTGAACGACACATGGAAGACGGAGATATTGTGCTTTTTAATCGTC 1172096 Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA 305405 | || || || || || ||||| || ||| | ||| ||||||||| | | | | Sbjct 1172095 AGCCTTCGCTTCACAAGATGTCAATTATGTCGCATCGAGTCAAAGTTATGCCGTGGCGAA 1172036 Query 305406 CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAA 305465 ||||||| || |||| | ||| || | || || ||||| ||||||||||| ||||||| Sbjct 1172035 CATTTCGCTTTAATGAATGTGTGTGCTCTCCATACAATGCCGATTTTGATGGCGATGAAA 1171976 Query 305466 TGAATATGCATGTACCTCA 305484 |||| |||||| | || || Sbjct 1171975 TGAACATGCATCTCCCACA 1171957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186764718504682