Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq1398 113 2e-20 >seq1398 Length=5533 Score = 113 bits (124), Expect = 2e-20 Identities = 440/675 (65%), Gaps = 34/675 (5%) Strand=Plus/Plus Query 11566 TTCGGGAACTACCGGGTGCAGAACGACGGTCAGCGCCATGCTCTGAGTCAGGCAAAATCC 11625 |||| || ||| |||| || |||||| ||||||||||| |||||| ||| || | Sbjct 7 TTCGCAAATTACGCGGTGGAGGGCGACGGCCAGCGCCATGCGCTGAGTATGGCCAAGAGC 66 Query 11626 ATCGCGGCAGAACT---GCATACCGGCTGCACGAATTTCGTGTTCAGCGGTAAACCTGGC 11682 |||| || || | ||| |||||| | | |||||| |||| || || || ||| Sbjct 67 TACGCG-CAAAATTTTGGCA--CCGGCTTTGCCAGTTTCGTTTTCACTGGAAAGCCCGGC 123 Query 11683 ACCGGGAAAAATCACCTTGCAGCAGCGATTGGCAACTGGCTGATGGCGAAGGGGAGAAGC 11742 || |||||||| ||||| |||| || || || || | ||| || | ||||| ||| Sbjct 124 ACGGGGAAAAACCACCTCTCAGCGGCCATCGGAAATTATCTGCTGAAGCAGGGGCGAACG 183 Query 11743 GTGATTATCGTCACCGTGTCCGATGTCATGAGTGTGTTGCATGACG-GCTATGACAACGG 11801 || | || || || ||| | ||| | | || | | | | |||| ||| | || Sbjct 184 GTCCTGATTGTGACAGTGCCGGATCTTACTC-TGCGCGCCCGGGCTTGCTACGACGAAGG 242 Query 11802 CAAGTCTGG---TGAGAAATTTTTACAGGAGCTTTGTGGAGTTGACCTTCTGGTCCTGGA 11858 |||| | || | | | | || || || ||| || || ||||| || || Sbjct 243 GCAGTCCGAATCTGCGC---TGCTGGATGACCTCTGCAAAGTGGATCTGCTGGTGCTCGA 299 Query 11859 TGAAATTGGCATGCAGCGGGATACGCGCAACGAGCAGGTCATACTGAACCAGATCGTCGA 11918 |||| | ||||| ||||| || | ||| |||| | || | |||||||||| | || Sbjct 300 TGAAGTCGGCATTCAGCGCGAAAGCCGCGGCGAGAAAGTTTTGTTGAACCAGATTATTGA 359 Query 11919 CCGCAGAACGGCATCACTGCGCAGTGTCGGGATGCTGACGAACCTGAATCACGCAGC--- 11975 ||| | ||| || ||||| || || | ||||| ||||||||| | | || Sbjct 360 TCGCCGCCTGGCCGCAATGCGCCCGGTTGGCGTTCTGACCAACCTGAATTATGACGCACT 419 Query 11976 -GATGAGCACACTCCTCGGCGAGCGGGTGATGGACCGTATGACCATGAACGGTGGTCGTT 12034 | |||| || | | |||| | | || || || || || |||| | || || Sbjct 420 GGTTGAG---AC-CGTTGGCGCGAGAGTTATCGATCGCCTGCGCATGGATAACGGAATTT 475 Query 12035 GGGTGAATTTTAACTGGGAGAGCTGGCGATCAAACGTTGGGCGTCAGGGTA-TGTGA--- 12090 ||||||||||| |||||||||||| || |||||| | | | | | ||| | Sbjct 476 GGGTGAATTTTGACTGGGAGAGCTATCGCGGAAACGTCAGCCACCTGAGACCTGTTAAGT 535 Query 12091 GAATTTTTGACGAGGTAAATTTTCGATGGAAACCGTATTGCATGCACTGAAAGCGATGGG 12150 ||||||| || || |||| || |||||||| | || | ||||||||||| ||||| Sbjct 536 GAATTTT-GAGGA--TAAAATT---ATGGAAACTATTTTAGACGCACTGAAAGCAATGGG 589 Query 12151 TAAAGCCAATTCTGTTGAACTGGCGGCGCGGCTTGATATC-AGCCGTGAAGAAGTTCTCA 12209 ||||| | || ||| | || ||||| || |||||| |||| || |||| || | Sbjct 590 CAAAGCTACTTACCGTGAGGTTGCAGCGCGCCTGGATATCGAGCC-TGTGGAAGCGCTGA 648 Query 12210 ACGAACTGTGGGAAC 12224 || ||| | |||| Sbjct 649 ACATGCTGCGCGAAC 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200504272894120