Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3042 187 4e-41 seq3101 111 2e-18 >seq3042 Length=3267112 Score = 187 bits (206), Expect = 4e-41 Identities = 371/541 (69%), Gaps = 20/541 (4%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || ||||| || ||||| || ||||| || ||||| |||| || | Sbjct 2153556 TGGCAGATGTAC-AAGAAGGCGGAAGCCTCGTTCTGGACAGCTGAGGAACTCGATCTAGT 2153614 Query 1455839 CGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 |||| | || |||||| || | || |||||||| |||| || ||||| Sbjct 2153615 ACACGACCTTAAGG---ACTGGGCAAGCCTTACAAACAACGAGCGCTATTTTATTAAGCA 2153671 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || || || ||||||||| || || ||||| || || || || ||||| | Sbjct 2153672 TGTGCTTGC-TTTTTTCGCAGCTAGTGATGGAATTGTCAATGAAAATCTGGCTATGAATT 2153730 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | | || || || || |||||||||| || | || ||||| || || ||||| || | Sbjct 2153731 TCAGCAATGAAGTGCAGGTGCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATCGCTATTG 2153790 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || || ||||| || || ||||| || ||||| || || |||||||| || | | Sbjct 2153791 AGAATATTCACTCGGAGGTGTATTCGCTTCTTATCGATACGTATATCAAGGACGCGATTG 2153850 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 |||||||||| || || || || || || || | || | || | ||||| || | | Sbjct 2153851 AGAAGGACCATCTATTGCGTGCAATTGAAACCATCCCTTGCGTCACAAAAAAAGCTCATT 2153910 Query 1456136 GGGCGATGAAGTG----GATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 ||||| | ||||| |||| || || | || || | | | ||| |||| | | Sbjct 2153911 GGGCGCTTAAGTGGTGCGATCCACGAGTA-----TCTTCA-TATCCGGAGAGGCTGTTAG 2153964 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| || || ||||| || |||||||| ||| |||||| | ||||||||||| | Sbjct 2153965 CTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGCTCAATCTTTTGGCTTA 2154024 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAA 1456310 ||||||| || || ||||| |||||| ||||| || || | || ||||| || ||| Sbjct 2154025 AGAAGCGTGGTCTGATGCCTGGTCTT-AGCTTTTCAAATGAGCTCATTAGTCGGGATGAA 2154083 Query 1456311 G 1456311 | Sbjct 2154084 G 2154084 >seq3101 Length=2481951 Score = 111 bits (122), Expect = 2e-18 Identities = 129/172 (75%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || | |||||||| |||| || |||| | | ||||| || Sbjct 1424637 ATGTCGATCATGAACTCATTCATAAACGACATATTCGAGCGTATCGCCTCAGAGGCTGGA 1424696 Query 725031 CGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| |||||| ||||||| |||||| ||| | |||||||| ||||| || | Sbjct 1424697 AAGCTGTCGCGCTACAACAAGAAGTCAACACTTTCG--AGCCGCGAGATTCAGACAGCTG 1424754 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || || ||| || || || |||| ||||||||| ||||| ||||| Sbjct 1424755 TGCGACTCATGCTGCCGGGTGAGCTCGCCAAGCACGCCGTGTCCGAAGGCAC 1424806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177506219288244