Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq653 318 8e-82 seq3042 208 1e-48 >seq653 Length=2021493 Score = 318 bits (352), Expect = 8e-82 Identities = 994/1529 (65%), Gaps = 19/1529 (1%) Strand=Plus/Plus Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 |||||| || | ||||| | ||| |||| || ||| |||||||| || | ||||| Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATT 68840 ||| || |||| ||| ||||| || ||||| ||||||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 68841 TCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGG 68900 | | ||||||| || | || | || || | |||||||||||| | || | Sbjct 711684 CCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGACGA 711743 Query 68901 TACA---ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957 | | || ||| | || | || | ||| || || ||||| |||||| | | Sbjct 711744 TGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGGAA 711803 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC---TCTAATGCACCGTA 69014 ||| || ||||| ||| | || || | ||| || ||| | || | | | || Sbjct 711804 TGTCTCGTAAGGACCTAATTCTTTTGCAATTTC-CA--TTGACGTTTCCATGGAAGAATA 711860 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| || || ||||| || ||||| || || | || |||| || || | || Sbjct 711861 GTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGTA 711920 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 || | |||||||| ||||| |||| |||||| || ||||| |||| |||| |||| Sbjct 711921 ATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTCG 711980 Query 69135 CTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAG 69194 | | || || ||||||||||| | ||||||||||| | ||| || | || ||||| Sbjct 711981 CATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAAG 712040 Query 69195 ATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 69254 || || |||| ||| |||||||| | | ||| | | ||||| | || | Sbjct 712041 GTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCATT 712100 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||| || || || |||||||| | ||| |||||||| || |||| | | | Sbjct 712101 CACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGT 712160 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| || | || |||| ||| || | || || || ||||||||||| || Sbjct 712161 ATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGTT 712220 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||| || ||||| ||||| || ||| | ||| ||||||||||||||||| Sbjct 712221 CGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAGC 712280 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC--TCT 69492 || | ||||| ||| | | |||||| || || | || | | | || || Sbjct 712281 GTCCAGAATAGCAAACCATAGCTGCTGAGCATTAAT--CGTTTTTCGAGCACGTCCATCC 712338 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 | ||| || | ||||||| ||||||||||| ||||| || | | |||||| Sbjct 712339 TGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATTCGTAAAGTCCAGGC 712398 Query 69553 CATTCATTTGGACACATCAATGACCACACAT--CATCATCCTTAACTCGTTTCATAAATA 69610 ||| || ||||| | | ||| ||| | ||| | | || || |||||||| | Sbjct 712399 GCTTCGTTCGGACAGA--AGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGA 712456 Query 69611 GATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 |||| || ||||| || || ||| || | ||| | || | || | ||||| || | Sbjct 712457 GATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTGA 712515 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || ||| | ||| ||||| || | || ||| | |||||| ||||||| ||| || || Sbjct 712516 TTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCA 712575 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | ||| || ||| || || ||||| | |||| ||||| | |||| | || Sbjct 712576 AACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAACG 712635 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | || ||| ||||| || ||||| ||| || || || || ||| ||||| | | Sbjct 712636 CGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTTTGTC 712695 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || || || || ||| | || || || || ||| ||| || || ||||| Sbjct 712696 GCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCACAT 712755 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 |||| | ||| ||||||||||| ||||| |||||| ||| | |||||| || Sbjct 712756 TGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGCAT 712815 Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || | ||| || | || || ||||| || | ||| || | ||||| || || Sbjct 712816 GACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAA 712875 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 | |||| || | | | |||||| || | || | || || || || |||||| Sbjct 712876 AACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTGAATT 712935 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 |||| ||| ||||| | | ||| || |||||||| || || ||| ||||| Sbjct 712936 CCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTACACGA 712995 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 || || || | || || || ||||| |||||||||| || |||||| | ||| Sbjct 712996 AAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACGGTCG 713055 Query 70210 TAAATAATAACAGAATTTAGTTTATCCTT 70238 || ||||| | ||||| |||| ||| || Sbjct 713056 TAGATAATTGCTGAATTGAGTTCATCTTT 713084 >seq3042 Length=3267112 Score = 208 bits (230), Expect = 1e-48 Identities = 417/609 (68%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| || ||||| || | || ||||| | |||||| | || || |||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAA 2154055 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| ||||||||||| || |||||||| || | |||| || || || Sbjct 2154054 AGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTG-AGCAGAATGAGCCT 2153996 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || || || || || |||||||| ||||| || | || ||||| || | || Sbjct 2153995 GAGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTCCGGATATGAAG-ATAC 2153937 Query 39788 TTATGTATC----CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | || ||| ||||| | ||||||| |||||| || | || ||||| || ||||| Sbjct 2153936 TCGTGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTC 2153877 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCA-TCACTATCTTTAACATATGTATCTATTAACA 39902 || ||| || |||| | || ||| || | || || | ||| ||||| || | | Sbjct 2153876 AATTGCACGCAATAGATGGTCCTTCTCAATCGCG-TCCTTGATATACGTATCGATAAGAA 2153818 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | ||||| || || || || || ||||| || || ||||| ||||| ||||| | | Sbjct 2153817 GCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAG 2153758 Query 39963 CTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 | || | | || || || || ||| || | |||| ||||||||| || ||||| Sbjct 2153757 CCTCTGGCACCTGCACTTCATTGCTGAAATTCATA--GCCAGATTTTCATTGACAATTCC 2153700 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 ||||||||| || ||||| || | ||||| ||||||||||| || | | ||| | Sbjct 2153699 ATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAG 2153640 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 | |||||| || | || | | || ||| | ||| ||||||||||| ||||| || Sbjct 2153639 GCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGC 2153580 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || ||||| |||||||| | ||| | ||| | | || || ||||| | || || | Sbjct 2153579 TTCCGCCTTCTTGTACATCTGCCACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCG 2153520 Query 40201 ATTTGGATT 40209 ||| ||||| Sbjct 2153519 ATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686881649929680