Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq112 201 9e-47 seq3042 168 5e-37 >seq112 Length=380982 Score = 201 bits (222), Expect = 9e-47 Identities = 497/744 (67%), Gaps = 14/744 (2%) Strand=Plus/Minus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAG---TTTCCGTTGCTAACT 40706 |||||||||||| ||||| || | | || ||||| | ||||| ||||| ||| Sbjct 85849 TCAATATTTGGAGCTCAAATGAGGTTTAGCTTAAGAAAAAATGTATTTCCATTGCTGACT 85790 Query 40707 ACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGT 40766 || |||| | || ||| ||| | || || || || || |||||||| | || Sbjct 85789 ACCAAAAGGGTATTCTGGCGAGGTGTAGCGGAGGAGCTATTGTGGTTTATTAGTGGAGAC 85730 Query 40767 ACTAATGCTAAGAAATTATCAGAAAGAGGAG-TGCACATTTGGAATGCGCACAGTTCTAA 40825 || |||||| | | | ||| || |||| | ||||| ||| ||| | | ||| Sbjct 85729 ACAAATGCTCAAACGCTG-CAGCAAAAGGATATTCACATATGGGATGGCAATGGATCTCG 85671 Query 40826 AACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTA 40885 ||| | |||| ||| | || | | || | ||| |||||||| || ||||| Sbjct 85670 TGAGTATCTAGATAGCCGAGGTCTCCAGACTCGAGAAGTAGGAGATCTTGGACCGGTTTA 85611 Query 40886 TGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAA 40945 ||| ||||| | ||| ||||||||||| |||||| | ||| | | |||||||| Sbjct 85610 TGGCTTTCAATGGCGTCATTTTGGAGCTAAATATACGAACATGCATGCGGATTATACTGG 85551 Query 40946 TAAAGGAATGGATCAA-TTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAG-C 41003 | |||| | ||||| || || | ||||| | | | | | | || || | || | Sbjct 85550 TCAAGGTGTTGATCAGCTTGAAGAG-GTTATTCAAAAGCT-ACGTAAGAGTCCAACAGAC 85493 Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || || ||| ||||||||||| | ||| | | |||||||| |||||| Sbjct 85492 CGTCGCATTATCCTGTCGGCGTGGAACCCTGCAGACCTCAACGAAATGGCATTACCACCT 85433 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| || || ||||| || ||||| || ||||||||||| |||| ||| Sbjct 85432 TGCCACATGTTTTGCCAATTTTATGTAGCAAATGGAGAGCTGTCATGTCAGATGTACCAA 85373 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | || | |||||||| || || || || ||||| || || || || || ||||| ||| Sbjct 85372 CGCTCGGCCGACATGGGGCTTGGCGTGCCATTTAATATTGCCAGCTACGCGCTGCTGACG 85313 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | | |||| || || || ||| |||||||||||||| | ||| | || ||| Sbjct 85312 CGTCTTGTTGCTCAAGTGACTGGATTAGAACCTGGTGAATTTATCCACGTCATTGGCGAT 85253 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| || | |||||| | ||||| || | | ||| |||| || | || | Sbjct 85252 GCGCATATCTATCTAAATCACGTCGAGCCACTACAAAAGCAATTGACGCGTACGCCACGT 85193 Query 41304 CCATTTCCAACGCTACTTATTAAACGCGCTGTTGA----AAACATTGATGATTTTTGCAT 41359 |||||||||||||| | ||||| | | || || || ||||||||| || | Sbjct 85192 CCATTTCCAACGCTGCACATTAATC-CTTTGAAGACGTCAAGCATTGATGACTTCAAGTT 85134 Query 41360 CGATGATTTTGTCGTTTGCGATTA 41383 || ||||||| |||| ||||||| Sbjct 85133 TGAAGATTTTGACGTTCGCGATTA 85110 >seq3042 Length=3267112 Score = 168 bits (186), Expect = 5e-37 Identities = 402/589 (68%), Gaps = 29/589 (5%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 ||||| ||||| | || || | ||||| |||||||| || || | || || || ||| Sbjct 2153532 TTTCCCATTCAGGAACACGATGTGTGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTGG 2153591 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAA-GACTT--AGCACATTGGATTGCATTAAAACCA 43825 ||||| || ||| | ||| | | || | ||| | || || | || || ||| || || Sbjct 2153592 ACAGCTGAGGAACTCGATCT-AGTACACGACCTTAAGGAC-TGGGCAAGCCTTACAAACA 2153649 Query 43826 CAAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | || ||||||| | | | | || || ||||| || || || || || || | Sbjct 2153650 -ACGAGCGCTATTTTATTAAGCATGTGCTT--GCTTTTTTCGCAGCTAGTGATGGAATTG 2153706 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAAGCACGATGT 43942 ||||||||||| ||| || | ||| |||| ||||| || | ||||| || || ||| Sbjct 2153707 TCAATGAAAATCTGGCTA-TGAATTTCAGCAATGAAGTGCAGGTGCCAGAGGCTCGCTGT 2153765 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || |||||||| || || || |||||||| ||||| |||| ||||| || Sbjct 2153766 TTCTACGGCTTTCAAATCGCTATTGAGAATATTCACTCGGAGGTGTATTCGCTTCTTATC 2153825 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAG---CATCGATTGTTTAATGCGATAGAAACA 44059 |||||||| ||||| || | | |||||| |||| |||| ||| || ||||| Sbjct 2153826 GATACGTATATCAAGGACGCGATTGAGAAGGACCATCTATTG---CGTGCAATTGAAACC 2153882 Query 44060 GTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC 44118 | || |||| | | | | ||||| | ||||| ||||| ||| || || | || Sbjct 2153883 ATCCCTTGCG-TCACAAAAAAAGCTCATTGGGCGCTTAAGTGGTGCGATCCACGAGTATC 2153941 Query 44119 T-----TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | ||||| | || | || ||||| | || || || ||||| || ||||| Sbjct 2153942 TTCATATCCGGAGA--GGCTGTTAGCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGC 2153999 Query 44174 TCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || || ||| | || |||||| | ||||| || ||| |||||||||| | | ||||| Sbjct 2154000 TCATTCTGC-TCAATCTTTTGGCTTAAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTC 2154058 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||||| | || ||||| |||||||| | || || ||||||||| Sbjct 2154059 AAATGAGCTCATTAGTCGGGATGAAGGTATGCACACGGACTTTGCTTGC 2154107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440683287810