Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq653 82.4 6e-11 >seq653 Length=2021493 Score = 82.4 bits (90), Expect = 6e-11 Identities = 252/385 (65%), Gaps = 11/385 (3%) Strand=Plus/Plus Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 |||| | ||||| | || |||| ||| ||| ||| || ||||||||||| | ||| Sbjct 712401 TTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGAGATC 712460 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCT---TTTTTCTCTTCTGTACCCATAAt 131724 ||| | ||||| || || |||| ||| | || | | ||| | || || | || Sbjct 712461 CGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCAT-TG---CCGTGAT 712516 Query 131725 tttttt-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCA 131783 | ||| ||||| | ||| || |||| || |||||||| ||||| ||||| | || | Sbjct 712517 TCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCAA 712576 Query 131784 TTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGC 131840 | ||||||||||| ||| ||||||| |||| ||| | | | || | |||| Sbjct 712577 ACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAACGC 712636 Query 131841 GCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGG 131900 ||||||| || | || || | || ||||||| | |||||| ||| | | Sbjct 712637 GCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTTTGTCG 712696 Query 131901 CTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 | | ||| ||||| | | | |||||| || || | |||| || || || |||| Sbjct 712697 CACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCACATT 712756 Query 131961 TGGTTAGAGTGTTATAGATACCTTC 131985 | || || | ||| |||||||| Sbjct 712757 GTTTAAGTGTATCATATATACCTTC 712781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918024356144