Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq653 159 4e-34 >seq653 Length=2021493 Score = 159 bits (176), Expect = 4e-34 Identities = 882/1393 (63%), Gaps = 50/1393 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | || ||||| || | ||||||| || ||||| || || || || || Sbjct 711591 GTACATGTTAGAAGTATATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGA 711650 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||||||||||| || || | || || || || | ||| | | | | | || Sbjct 711651 TGCTGTTGGCATAGGGGCTACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTT 711710 Query 110827 CTTGAGAACATCCCAGTCGTA--GTT--GAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||| ||||||| || | || || ||| | || | ||||||||||||||| Sbjct 711711 CTTGAGTGCATCCCAATCCCAAAGTCCCGACGATGGAGTGAC-TCCCCACATGTCAAACT 711769 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 ||| | |||| | || || || || | || || || || | |||| ||| | Sbjct 711770 GAAAAATGCCTTTGCTTGCTGGTGATCCTTGGAATGTCTCGTAAGGACCTAATTCTTTTG 711829 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | ||| || |||| ||| | | || || || ||||| ||| ||||| Sbjct 711830 CAATTTCCATTGACGTTTCCATGGAAGAATAGTAAATCGTCTCAAAAATATTTTTATTCA 711889 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 ||| || | ||||| ||||| | |||||| |||| || || | Sbjct 711890 GCTCGCGCGCCGAAGGACTCTCAAACGCGTAATTCATGAGAATAAACGCATCAGCCAGTC 711949 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACG 111121 | || || || | || | |||| ||||||||| || |||||| || ||| ||| Sbjct 711950 CCTGGACGCCAATGCCGACCGGTCGGTGTCGCATGTTGGACTTTTCAGCT-TCTATGACG 712008 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 |||||| |||| |||||||| ||| || || || || || || | || Sbjct 712009 GGATAATAATTGACATCAATGACCTTGTTAAGGTTGCGCGTCACTATTTTCACCACGTCG 712068 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | | ||| | || |||||| || ||||| ||| | || || | ||| | Sbjct 712069 TACAATTTCTGGTAGTCAAAAACACGG------TCATTCACAAATTTAGGCAAGGCCACA 712122 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 ||||||||||||||||| || |||||| | || || || | | ||| ||| Sbjct 712123 GATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGTATATTCCATCACTTCGCAGCAT 712182 Query 111302 AAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTT--ACTCTTCTTGTTGCACG 111356 || ||| |||| ||| || || | ||| | ||||| ||| ||| | ||| | Sbjct 712183 AAATTGCTCGAACG---AATTGTGCCAAGATTTTGCTGGTTCGACT-TTCGATTCGCA-G 712237 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 | || ||||||||||| || || || || || |||| | | |||||||| || Sbjct 712238 CGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAGCGTCCAGAATAGCAAACC 712297 Query 111417 AAACATCGGCGGCTG-GTAC-AATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGT 111471 | | || |||| | | ||| | || || ||||| ||| |||||||| || Sbjct 712298 ATA-----GCTGCTGAGCATTAATCGTTTTTCGAGCACGTCCATCCTGTTCGTACTTAGT 712352 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGT-CGGAGAGACCTGGTGCCTTGTCTGGAC 111530 || | || || || || |||||| | || | || | || || || || | || |||| Sbjct 712353 ATATAATGCATCGAATTCATCACCC-CAGCATTCGTAAAGTCCAGGCGCTTCGTTCGGAC 712411 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 |||| ||| ||| | ||| | || || |||||||| || || || || ||||| | Sbjct 712412 AGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGAGATCCGGTATCCATA 712471 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | | || | ||| | ||| || | || || || ||| || || | Sbjct 712472 GTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTGATTCTTTCGCAAATCCA 712531 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG-- 111708 | || || | | ||| || ||||| || || | ||||| || | ||||| || || Sbjct 712532 GAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCAAACGATCCTTTGCGCT 712591 Query 111709 -ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 || ||| |||||| ||||| || || || | ||||| ||||| | ||||||||| | Sbjct 712592 TACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAACGCGCAACATTGGAATGA 712651 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 | |||| ||| || || || |||||||| | | | ||| | | | || | Sbjct 712652 TTCCATTCGATGAGCCGTTGGTGCCCCGAAT--GTAACTGTTTGTCGCACGGAT----GT 712705 Query 111828 TGTGCATCC------CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 ||||||| | |||| || |||||||| || || || |||||| | |||| | Sbjct 712706 TGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCACATTGTTTAAGTG 712765 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||| ||||| | ||||| || |||| | || | ||| ||||| || | | Sbjct 712766 TATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGCATGACGATAATT 712825 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGG 112001 | || | |||||||| ||||||||||| |||||||| ||||| | || | ||| | Sbjct 712826 GTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAAAACTTTTGTG 712885 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| ||||||||||| | ||| | |||||| | | ||| || || | || | Sbjct 712886 ACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTGAATTCCTAACGCCA 712945 Query 112062 CCCGCATGAACAT 112074 | || | || ||| Sbjct 712946 CACGAAGGATCAT 712958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007177035200