Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq653 154 2e-32 >seq653 Length=2021493 Score = 154 bits (170), Expect = 2e-32 Identities = 413/629 (66%), Gaps = 7/629 (1%) Strand=Plus/Plus Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994 |||||||| || || | || || || || |||||| | || | || || || || Sbjct 712342 TCGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATTCGTAAAGTCCAGGCGCT 712401 Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 119054 | | || ||||||||| ||| | ||| | | || || |||||||| ||||| || Sbjct 712402 TCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGAGATCC 712461 Query 119055 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 119114 || ||||| || || |||| | ||| || ||| | |||| || ||||| Sbjct 712462 GGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTGATTCTTT 712521 Query 119115 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 119174 ||||| |||| ||| || | | ||| || ||||||||||| | || | || | || Sbjct 712522 CGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCAAACGAT 712581 Query 119175 CCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 || || || || |||| | || | ||||| | ||||| | ||||| || || | | Sbjct 712582 CCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAACGCGCAAC 712641 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTC 119289 ||||||||||| |||| ||| ||| || || |||||||| | ||| ||| || | Sbjct 712642 ATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAAT--GTAACTGTTTGTCGCAC 712699 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 || | ||| || | ||||| || || ||||| || || || ||| || | Sbjct 712700 GGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCACATTGTT 712759 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 | || | | || || || || || || ||| ||| |||| | || ||||| || Sbjct 712760 TAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGCATGACG 712819 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 | | ||| || | |||||||| || |||||||| ||||||||||||||| | || | Sbjct 712820 ATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAAAACT 712879 Query 119470 CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529 ||| ||||| ||||| ||||| | | || |||||| | | |||||| || | Sbjct 712880 TTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTGAATTCCTA 712939 Query 119530 TCGAGACCCGCATAAACATGTATTGGGGT 119558 || || || | | ||| | ||| ||| Sbjct 712940 ACGCCACACGAAGGATCATCTGTTGAGGT 712968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410756348720