Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq653 194 2e-44 seq810 98.7 1e-15 seq322 91.5 2e-13 >seq653 Length=2021493 Score = 194 bits (214), Expect = 2e-44 Identities = 420/624 (67%), Gaps = 17/624 (3%) Strand=Plus/Minus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| || | || ||||| | || ||||| | | |||||| | ||| | |||||| Sbjct 712958 ATGATCCTTCGTGTGGCGTTAGGAATTCACAAGAATGACATTAAAGCTGCACTCGAGACA 712899 Query 104291 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 104350 ||||| ||||| ||| | || | ||||| |||||||| ||||||||||| ||| Sbjct 712898 TACGAGTTCATGTCACAAAAGTTTTTTACCCACGCGACACCAACACTCTTCAATGCAGGT 712839 Query 104351 ACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 104410 ||||| | || ||| | || ||||| ||| | || | |||| || ||||| | Sbjct 712838 ACACCGCGTCCACAATTATCGTCATGCTTTCTTTTGGCAATGCAGGATGATTCAATAGAA 712779 Query 104411 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG-- 104468 ||||| |||| || |||| | |||||| || || || |||||||| || |||| Sbjct 712778 GGTATATATGATACACTTAAACAATGTGCGTGTATTTCGAAATGGGCTGGTGGGATTGGA 712719 Query 104469 ----GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524 | ||||||| | || | | | ||| | | | |||||||| || || || Sbjct 712718 GTTAGTATGCACAAC----ATCCGTGCGACAAACAGTTAC--ATTCGGGGCACCAACGGC 712665 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 ||| |||| || ||||||||| | ||||| ||||| | || || || ||||| || Sbjct 712664 TCATCGAATGGAATCATTCCAATGTTGCGCGTTTTTAATGATACTGCTCGATATGTGGAT 712605 Query 104585 CAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGAT 104641 |||| ||| || || || ||||| | || ||||| | || || ||||| || ||| Sbjct 712604 CAAGGTGGTGGTAAGCGCAAAGGATCGTTTGCTATCTATTTAGAACCGTGGCATGCCGAT 712545 Query 104642 ATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGAT 104701 | | || || || || ||||| || || || | ||| || ||| ||| Sbjct 712544 GTTTTTGAATTTCTGGATTTGCGAAAGAATCACGGCAATGAGCTACATCGTGCCCGTGAT 712485 Query 104702 CTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT 104761 | |||| || || ||||| || |||||||| |||||| | || || | || |||||| Sbjct 712484 TTGTTCTATGCACTATGGATACCGGATCTCTTTATGAAGCGCGTCGAAGCGAATGGCAAG 712425 Query 104762 TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG-ATGCCGTGGGTGAGGAGTT 104820 ||| |||||| ||||| || | || ||||| || | || |||| | |||||| || || Sbjct 712424 TGGAGTCTCTTCTGTCCGAACGAAGCGCCTGGACTTTACGAATGCTG-GGGTGATGAATT 712366 Query 104821 TGAAGCCCTTTACACAAAGTACGA 104844 || || | || || |||||||| Sbjct 712365 CGATGCATTATATACTAAGTACGA 712342 >seq810 Length=2620190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 308/466 (66%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| || || || ||||| ||||| | || || | ||||| ||||| | ||||| Sbjct 1919940 GATCTGCCGGTCGAACCGACCAGGACGTAAGATAGCCTTGTCAAGTATATCGGCACGATT 1919999 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 || | || | ||| || | |||| ||| || | ||| |||||||||||| || Sbjct 1920000 TGTACCAGCCAGGACCACTACACCT---TCACTAGAGTTAAACCCATCCATCTCTACCAG 1920056 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT---GGCATACCACCAGCACTGCG 9690 || ||||||| || | ||| || ||||| || || | | || || || Sbjct 1920057 TAGCTGGTTAAGTGTATTTTCGCGCTCATCGTTGCCTCCTGAGAAGTTTCCCTTGCTACG 1920116 Query 9691 TTGCTTTC-CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 | | | | |||| ||||| || |||||||| || || ||||| || ||| |||||| Sbjct 1920117 T-GATCGCGCCACTGCATCGATTTCATCAATAAATACTATGCACGGAGCATTAGCGCGAG 1920175 Query 9750 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 | | | || ||||| || ||||| | || ||||| |||||||| || | ||| | Sbjct 1920176 CTTCCTTGAAAAGATCACGCACACGTGATGGACCGACACCGACAAACATTTCAATAAAAT 1920235 Query 9810 TTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 9869 || | ||||| || ||| || || | | ||| ||||| | ||| || | | Sbjct 1920236 CTGAGCCGGAAATACTGAAGAATGGCACGCTCGCTTCGCCCGCCGTCGCTTTCGCCAACA 1920295 Query 9870 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA- 9928 | |||||||||||||| || || | || | ||| || || ||||| |||||| Sbjct 1920296 GCGTCTTACCCGTACCAGGGGGCCCAACCAGCAAGGCGCCCTTCGGTATCTTTGCGCCAA 1920355 Query 9929 -CT-TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 || | |||| || || | |||| ||| ||||||||||| ||| Sbjct 1920356 GCTCTGTAAAG-CGCT-TCTGATTGCGTAA-AAAATCCACAAATTC 1920398 >seq322 Length=2746546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 292/446 (65%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCT 9628 ||||| ||||| || || || | || || | |||| || || |||||||||||| Sbjct 2695514 CGATTTGTCGCTGCAATCACTATAACTCCGCTAGCATTTCCTTCGAACCCATCCATCTCT 2695573 Query 9629 GTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTG 9688 ||||| | |||||||| ||||| || ||||||||||| | || |||||| | Sbjct 2695574 GTCAACAATTGGTTAAGCGTTTGCTCTCGTTCATCATTTGAATTAATCCCACCA----CG 2695629 Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 9748 || | || | | ||||||||||| || ||||| | ||| ||| | ||| | | Sbjct 2695630 CGCT--TTAGCTAGCGCATCAATCTCGTCGATGAAAATGATACATTGCGGATACTGTGAA 2695687 Query 9749 GC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 || | | ||| ||||||||||| || || || |||||||| |||||| ||||| Sbjct 2695688 GCTTGCGTGAAA-AGATCCCGTACTCGAGCTGCACCTCTACCAACAAGCATCTCGACAAA 2695746 Query 9808 GTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 || | || ||||| || || | || | ||| ||| | |||| || || Sbjct 2695747 GTCAGAAGCTGAACAAAAGAGAAACGCAACTCCTGCTTCTGACGCGACTGCTCTAGCAAG 2695806 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || ||||| || || |||| || || || ||||| ||||| ||||| || Sbjct 2695807 TAGCGTCTTGCCAGTTCCTGAAGGTCCACAAAGTAGTACACCTTTTGGAACTTTGGCACC 2695866 Query 9928 ACTTCCAAAGTATCTCTCAGGTTG-CTTAAGAAAATCCACAATTTCTTCCAATTCATCTT 9986 | || | ||| | | || || | |||| || ||||| | || ||||| || | | Sbjct 2695867 AATTGCTTGGTACTTGGCTGGATGTCGTAAG-AATTCCACGACCTCCTCCAACTCTTTTC 2695925 Query 9987 TGGCGGCGTCAATCCCCTCAACATCG 10012 | ||| | ||||| || | |||||| Sbjct 2695926 TTGCGCCATCAATGCCTGCCACATCG 2695951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237746616880