Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq112 125 6e-24 >seq112 Length=380982 Score = 125 bits (138), Expect = 6e-24 Identities = 286/421 (68%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 111705 TTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTC 111764 ||||| |||| | |||||||| ||| | ||||||||| || || ||||| ||||| Sbjct 85217 TTGTAGTGGCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACGTGGATAAATTC 85276 Query 111765 CCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAAT 111824 | ||| || || ||||| | || |||| | || || || ||| || ||||| Sbjct 85277 ACCAGGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAAT 85336 Query 111825 GTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTT 111884 ||||||||||| || || ||||| || |||| | ||| || | ||||||||| || | Sbjct 85337 ATTAAATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTC 85396 Query 111885 ATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCA- 111943 | || ||||||||||| |||| | || ||||| || |||||||| | || | Sbjct 85397 TCCATTTGCTACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAG 85456 Query 111944 ---TAAAGGGTCCCCATGCACACATGATCATCCTTCTG-CTGTAG--CGATTATGTTCAA 111997 | ||||| ||| || ||| ||| || | | | |||| | | ||| || | Sbjct 85457 GTCTGCAGGGT-TCCACGCCGACAGGATAATGCGACGGTCTGTTGGACTCTTACGT---A 85512 Query 111998 TGTCGTGTATGAC--ATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACA 112055 | || || || |||| ||||| || | |||| ||||||||||||||| || || Sbjct 85513 GCTTTTGAATAACCTCTTCA--AGCTGATCAACACCTTGACCAGTATAATCCGCATG-CA 85569 Query 112056 T-CCAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTC 112114 | || ||| | || ||| | || | |||||| || ||||||| || || ||||||| Sbjct 85570 TGTTCGTATATTTAGCTCCAAAATGACGCCATTGAAAGCCATAAACCGGTCCAAGATCTC 85629 Query 112115 C 112115 | Sbjct 85630 C 85630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391930495641406