Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3042 161 1e-34 seq653 87.8 2e-12 >seq3042 Length=3267112 Score = 161 bits (178), Expect = 1e-34 Identities = 391/578 (68%), Gaps = 13/578 (2%) Strand=Plus/Plus Query 59561 CTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTG 59620 |||||| || | | | | ||| ||||| |||| ||||| ||| | || ||||| Sbjct 2153531 CTTTCCCATTCAGGAACACGATGTGTGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTG 2153590 Query 59621 GTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC-TCAATTACG 59679 | | | ||||| | || || | ||||| ||||| |||| ||||| | | || Sbjct 2153591 GACAGCTGAGGAACTCGATCTAGTACACGACCTTAAGGACTGGG-CAAGCCTTACAAACA 2153649 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 |||||| |||| || ||| || || || || ||||| || |||||||||||||| | Sbjct 2153650 ACGAGCGCTATTTTATTAAGCATGTGCTTGCTTTTTTCGCAGCTAGTGATGGAATTGTCA 2153709 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 |||||| | | ||||| || ||| || || ||| | | ||||| || | |||| Sbjct 2153710 ATGAAAATCTGGCTATGAATTTCAGCAATGAAGTGCAGGTGCCAGAGGCTCGCTGTTTCT 2153769 Query 59800 ACGCGTATC-AGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || | ||| | | ||| ||| ||||| ||| ||| ||||| | |||||| Sbjct 2153770 ACGGCTTTCAAATCGCT-ATTGAGAATATTCACTCGGAGGTGTATTCGCTTCTTATCGAT 2153828 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCC 59917 | || ||||||| || ||||||| ||| || ||||| || || | | |||| Sbjct 2153829 ACGTATATCAAGGACGCGATTGAGAAGGACCATCTATTGCGTGCAATTGAAACCATCCCT 2153888 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGGAG---CATCAT 59973 || || | | ||||||| | ||||| | ||||| || | ||| ||| | |||| Sbjct 2153889 TGC-GTCACAAAAAAAGCTCATTGGGCGCTTAAGTGG-TGCGATCCACGAGTATCTTCAT 2153946 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 | | | | || |||||||||| ||| || || || || || ||||| ||||| ||| Sbjct 2153947 ATCCGGAGAGGCTGTTAGCTTTTGC-TGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTC 2154005 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || || ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 2154006 TGCTCAATCTTTTGGCTTAAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAG 2154065 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 || ||| ||||| || || | || ||| ||||| Sbjct 2154066 CTCATTAGTCGGGATGAAGGTATGCACACGGACTTTGC 2154103 >seq653 Length=2021493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 20621 AAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCC 20680 ||||| | |||| ||| || |||||||| ||||||| | | | |||||| | ||| Sbjct 711437 AAGGAAAAGTACAAGACTGTGTGGGAAATTAAACAGAAGGCCGTGCTAGACATGTCAGCC 711378 Query 20681 GATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740 ||||| ||||| || || |||| ||||||||| || | ||| | | |||| | Sbjct 711377 GATCGAGGCGCGTATATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCTGACCCGACC 711318 Query 20741 CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800 | || || | |||||||| | || | ||| | ||||| ||||||||||||||| Sbjct 711317 ATTAGTAAACTTACGTCCATGCACTTCTATGCTTGGAAAAAGGGACTCAAGACGGGCATG 711258 Query 20801 TACTATCTGCG 20811 ||||| |||| Sbjct 711257 TACTACATGCG 711247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548503119557280