Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq286 89.7 6e-13 seq653 87.8 2e-12 >seq286 Length=985874 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 ||||| ||||| ||||| | || || |||| || || || ||||||| || || Sbjct 944778 GTGGCATCCCGCACGTTTAACAATTTGCCACGCAAGGGGAATACACCAAACTGATCTCGC 944719 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATA 118288 ||||||||| | ||||| | ||||| ||||| || || || || || || | ||| Sbjct 944718 CCCACAACGGCTAGACCGGCTACTGCAAGTGCCTTAGCGGAATCTCCTTCAGTCAAGATA 944659 Query 118289 AGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTTCGGAAC 118347 || | |||||| || |||| || ||| ||| | || ||||| || ||||||||||| Sbjct 944658 AGCGAACACTCGCTGGAGCGAGGACCACCAGCCAAGTTTGCATCTTCTAGCTTCGGAAC 944600 >seq653 Length=2021493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 ||||| | ||| ||| |||||||| ||| ||||||| || | |||||| || Sbjct 711437 AAGGAAAAGTACAAGACTGTGTGGGAAATTAAACAGAAGGCCGTGCTAGACATGTCAGCC 711378 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC- 55848 ||||| || ||||| || |||| |||||| |||||||| ||| | | || | Sbjct 711377 GATCGAGGCGCGTATATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCTGACCCGACC 711318 Query 55849 ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTAT 55908 | | | || || | || |||||||| || | ||||| ||||||||||||||||| || Sbjct 711317 ATTAGTAAACTTACG-TCCATGCACTTCTATGCTTGGAAAAAGGGACTCAAGACGGGCAT 711259 Query 55909 GTACTATCTGCG 55920 |||||| |||| Sbjct 711258 GTACTACATGCG 711247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194371287600