Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq321 190 2e-43 seq252 127 2e-24 seq653 109 6e-19 >seq321 Length=1809241 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| ||||| |||||||| || || || || || ||| | Sbjct 557355 AATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAGCCGTC 557296 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||||| ||| | ||| ||||||||||||||||| || ||||| || ||||| Sbjct 557295 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTGACCA 557236 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| ||||| |||| ||||| || || |||||||| Sbjct 557235 GCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGACTATAA 557176 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || |||||||| || |||||||| || ||||| Sbjct 557175 CATTCAGAAAGAGTCGACGCTTCATCTTGTATTGCGTCTGCGTGGTGG 557128 >seq252 Length=912309 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| | ||||||||||| || || | || || || | Sbjct 785743 ATCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATCACGTTGGATGTGGAACCT 785684 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| ||||||| ||| | ||| ||||||||||| ||||| || ||||| || ||| Sbjct 785683 TCTGACAGCATTGACAATGTCAAGCAAAAAATTCAGGATAAGGAAGGTATTCCACCTGAC 785624 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| ||||| ||||| || ||||||| || |||| |||||||| Sbjct 785623 CAGCAGCGCTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGATCCCTTGCAGACTAC 785564 Query 27583 AATGTCCAAAAGG 27595 || | || |||| Sbjct 785563 AACATTCAGAAGG 785551 >seq653 Length=2021493 Score = 109 bits (120), Expect = 6e-19 Identities = 660/1046 (63%), Gaps = 39/1046 (4%) Strand=Plus/Plus Query 80041 CGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTG 80100 |||| |||||||||||||||||||| ||||| ||||| | || | |||||| || | Sbjct 711247 CGCATGTAGTACATGCCCGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTA 711306 Query 80101 AGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 || || || || |||| | ||| |||||||| ||||| ||| || || | Sbjct 711307 AGTTTACTAATGGTCGGGTCAGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATATAC 711366 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGA 80220 || || ||||| || | ||| || | | | ||| ||| ||||||||| || || Sbjct 711367 GCGCCTCGATCGGCTGACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACACAGTCTTG 711426 Query 80221 TAC---ACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACCGTCC 80274 ||| |||| | | |||| |||||| | | ||||| || |||| || Sbjct 711427 TACTTTTCCTT---CACCGCCTCGGGAATGGCTTTGATCTTTTGAACCGACCCACTATCG 711483 Query 80275 TTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACA 80334 || | |||||| ||| || || | |||||||| || | | || ||||||| Sbjct 711484 TTCAAAATTTGGTTTCGCACTTGTGGCGTCCAGATTCCTAATTCAATTAGCTCTTTCATC 711543 Query 80335 AGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTA 80394 || | ||| || | || ||| || || || | |||||| |||| ||| | | Sbjct 711544 AGATACTTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAA 711603 Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 || || ||||| | || || ||||| || | |||||||| || || || ||||| Sbjct 711604 GTATATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATA 711663 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA---TATCCTCGCGCAAATCT 80511 ||| | |||| || |||||||| | || || | | | | | | || | | ||| Sbjct 711664 GGGGCTACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCC 711723 Query 80512 GA--CCAAAAATCAACCCCAACGCT---GTGA--CCCCACATGTCGTGCTGCAAGATGCC 80564 | || ||| | ||| ||| | |||| ||||||||||| ||| || ||||| Sbjct 711724 CAATCCCAAAGT----CCCGACGATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCC 711779 Query 80565 CTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTC-TTGGCCAGCTC-- 80621 | || || || || ||| |||||||| || ||| || || || | || Sbjct 711780 TTTGCTTGCTGGTGATCCTTGGAATGTCTCGTA-AGGACCTAATTCTTTTGCAATTTCCA 711838 Query 80622 -ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 ||| ||||| || | | ||||| |||||| | || |||| ||| Sbjct 711839 TTGACGTTTCCAT---GGAAGAATAGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGC 711895 Query 80681 GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 ||||| || || |||| | ||| | || ||| | |||||||| ||||| | Sbjct 711896 GCGCCGAAGGACTCTCAAACGCGTAATTCATGAGAATAAACGCATCAGCCAGTCCCTGGA 711955 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAA 80800 |||| ||| ||| ||| ||||| ||| |||| || || || || | || ||| Sbjct 711956 CGCCAATGCCGACCGGTCGGTGTCGCATGTTGGACTTTTCAGCTTCTATGACGGGATAAT 712015 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTT 80860 | || ||| ||||| ||| |||||||| || || | || || | | || Sbjct 712016 AATTGACATCAATGACCTTGTTAAGGTTGCGCGTCACTATTTTCACCACGTCGTACAATT 712075 Query 80861 TCTGAAAGTCGAA---TTGGTTCCCCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGA 80916 |||| |||| || ||| | ||||||||| || ||||| || || |||| | Sbjct 712076 TCTGGTAGTCAAAAACACGGT---CATTCACAAATTTAGGCAAGGC-CACAGATGCCAAA 712131 Query 80917 TTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 ||||| || || || || || | | ||| | || | | ||| ||| ||||| Sbjct 712132 TTGCAAACTGCGACTTCATCCGGAGAAGTATATTCCATCACTTCGCAGCATAAATTGCTC 712191 Query 80977 GACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 || |||||| || || |||| |||||| ||||| || |||||| |||||| | Sbjct 712192 GAACGAATTGTGCCAAGATTTTGCTGGTTCGACTTTCGATTCGCAGCGTCTTTGTAGAGC 712251 Query 81037 ATGTACGGGGTACCGGTCTCGACCTG 81062 || || || ||| || || | ||| Sbjct 712252 ATATAAGGAACACCAGTTTCAATCTG 712277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570287858481440